Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01305 ATGGCTTCAGCAAGCGGAGCGGAGAATTCCTCCGTCCCGCCGTCGCCGTTGCCGCCTCCGCCGCCGCCGCAAATCCACACCTCGCGGACGAAGCTGAGCCACCACCACCacaacaacaacaacaacaacaacaacaacaTCGACTCCACGAGCAAGGCCATCGCGCAGTACACGGAGGACGCGCGGCTCCACGCCGTCTTTGAGCAGTCCGGCGAGTCCGGGAGGTCCTTTGACTACTCCCAATCAATCCGCGTCACATCGGAATCCGTCCCGGAGCAGCAGATAACGGCTTACCTTCTCAAAATTCAGCGCGGCGGCTTCATCCAGCCCTTCGGCTCCATGATCGCCGTCGACGAGCCCTCCTTCCGCATCCTTGCCTACTCCGACAACGCCCGTGACATGCTCGGCATTACTCCACAGTCCGTCCCTTCGCTCGACGACAAGAACGACGCCGCCTTCGCGCTCGGAACCGATATCCGAACCCTCTTCACTCACTCCAGCGCCGTTCTCCTCGAAAAGGCCTTCTCCGCGCGCGAAATTAGCCTCATGAACCCTATCTGGATTCACTCCAGAACCTCCGGGAAGCCTTTCTATGGAATCCTCCACCGAATTGACGTCGGAATTGTCATCGATTTGGAGCCTGCGCGGACGGAGGATCCTGCCCTCTCCATCGCCGGAGCTGTCCAGTCGCAGAAGCTCGCGGTTCGCGCGATTTCGCAGCTTCAATCTCTCCCCGGTGGCGATGTTAAGCTTCTTTGTGATACTGTTGTTGAGAGTGTCAGGGAATTGACAGGGTATGATAGGGTTATGGTTTATAGGTTTCATGAGGATGAGCATGGGGAGGTTGTTGCTGAGACTAAGAGGCCTGATTTGGAGCCTTACATTGGATTGCATTATCCCGCTACTGATATTCCTCAGGCTTCTAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTCATGCTTCTGCTGTGAGGGTGGTGCAGGATGAGGCTCTTGTGCAGCCTCTGTGTTTGGTTGGGTCCACGCTCAGGGCGCCTCACGGTTGCCATGCTCAGTATATGGCTAACATGGGCTCGACTGCGTCGTTGGTGATGGCTGTTATTATCAATGGGAATGATGAGGAAGGTGTTGGTGGCCGCACTTCGATGAGGTTGTGGGGGCTTGTTATTTGCCACCATACCTCTGCTAGGTGTATTCCTTTTCCCTTGAGGTATGCTTGTGAGTTTCTGATGCAGGCGTTTGGGCTGCAGTTGAACATGGAGCTTCAGTTGGCCGCACAGTCGTTGGAGAAGCGGGTTTTGAGGACACAGACTCTGTTGTGTGATATGCTTCTCAGGGACTCTCCTACTGGCATTGTAACTCAGAGTCCTAGTATTATGGACTTGGTGAAGTGTGACGGAGCTGCTCTTTATTACCAAGGGAACTATTATCCGTTGGGTGTGACTCCAACTGAGGCTCAGATAAGGGATATTATTGAGTGGTTGTTGGCCTTTCATAGAGATTCGACTGGTTTGAGTACTGATAGTCTGGCTGATGCTGGCTATCCTGGGGCTGCCTCGCTTGGGGATGCAGTTTGTGGGATGGCGGTTGCTTATATTACAGAGAAGGATTTTCTTTTCTGGTTCAGGTCGCACACGGCGAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCTGAGGACAAGGATGATGGGCAGAGAATGCATCCCCGTTCTTCCTTCAAGGCATTTTTAGAAGTGGTGAAAAGCCGTAGCTTGCCGTGGGAGAATGCGGAAATGGATGCAATTCACTCTTTGCAGCTTATTCTGCGTGACTCGTTTAAAGATGCTGAGCATAGCAATTCTAAGGCTGTTTTGGATCCCCGTATGTCGGAACTAGAGTTGCAAGGGGTCGATGAACTAAGTTCTGTAGCCAGAGAGATGGTTAGATTGATCGAAACAGCCACTGCTCCAATATTTGCTGTTGATGTTGATGGCCGCATAAATGGGTGGAATGCAAAGGTTTCAGAATTGACAGGACTCCCAGTTGAGGAGGCTATGGGGAAGTCCTTGGTTCGCGATCTTGTGTTTAAGGAGTCTGAAGAAACTGTGGACAAGCTTCTTTCTCGTGCTTTAAAAGGTGAAGAAGATAAGAATGTTGAGATAAAAATGAGGACGTTTGGCCCAGAACATCAAAATAAGGCAGTTTTTGTAGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATGTAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGGTCAAAAAATTGTGATGGACAAATTCATCAACATACAAGGCGACTACAAGGCTATTGTACATAATCCAAATCCTTTGATCCCTCCCATTTTTGCATCGGATGATAACACGTGTTGCTTAGAGTGGAACACTGCAATGGAAAAGCTTACTGGTTGGAGCCGCGCGGATGTCATTGGAAAAATGTTGGTGGGAGAGGTTTTCGGCAGTTGCTGTCAGTTGAAGGGTTCAGATTCAATAACAAAGTTCATGATTGTCTTACACAATGCGCTTGGTGGACATGATACAGATAGATTCCCTTTTTCATTTCTTGATCGGTATGGCAAGCATGTGCAAGCTTTCCTGACTGCAAATAAGAGGGTTAACATGGATGGTCAGATCATTGGGGCATTTTGCTTTTTGCAAATTGTGAGTCCGGAACTTCAACAGGCTCTGAAGGCACAGAGACAACAAGAGAAGAATTCATTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGGAGTTAAGAATCCTTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGGCTACATGCTTGTCCAATGAGCAAAAACAGTTTCTTGAGACTAGTGCTGCTTGTGAGAAGCAAATGTTAAAGATAATACACGATGTTGATATTGAAAGCATTGAGGATGGGTCCCTGGAGCTTGAAAAGGGGGAATTCTTGCTTGGAAATGTCATAAATGCAGTTGTTAGCCAAGTAATGCTACTGTTAAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTTTATGGTGATCAATTGAGGATTCAACAAGTGTTGTCTGATTTCTTATTGAATATAGTGCGCTATGCACCATCTCCAGATGGCTGGGTAGAGATTCATGTACATCCAAGAATAAAACAAATCTCAGATGGGCTCACTCTTCTCCATGCTGAATTTAGAATGGTATGTCCTGGTGAAGGTCTTCCTCCTGAATTGATTCAAAACATGTTCAATAACAGTGGGTGGGGGACTCAAGAAGGTTTAGGGCTGAGCATGAGCAGGAAGATTCTAAAGCTAATGAACGGCGAAGTGCAGTATATCAGGGAGGCCCAACgctgtaagattaagtttaaagCCCTGGCACTGCCCCTCATGCTGACCATTAGATAG 3444 0.4739 MASASGAENSSVPPSPLPPPPPPQIHTSRTKLSHHHHNNNNNNNNNIDSTSKAIAQYTEDARLHAVFEQSGESGRSFDYSQSIRVTSESVPEQQITAYLLKIQRGGFIQPFGSMIAVDEPSFRILAYSDNARDMLGITPQSVPSLDDKNDAAFALGTDIRTLFTHSSAVLLEKAFSAREISLMNPIWIHSRTSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDTVVESVRELTGYDRVMVYRFHEDEHGEVVAETKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASAVRVVQDEALVQPLCLVGSTLRAPHGCHAQYMANMGSTASLVMAVIINGNDEEGVGGRTSMRLWGLVICHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGNYYPLGVTPTEAQIRDIIEWLLAFHRDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDAEHSNSKAVLDPRMSELELQGVDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVSELTGLPVEEAMGKSLVRDLVFKESEETVDKLLSRALKGEEDKNVEIKMRTFGPEHQNKAVFVVVNACSSKDYTNNVVGVCFVGQDVTGQKIVMDKFINIQGDYKAIVHNPNPLIPPIFASDDNTCCLEWNTAMEKLTGWSRADVIGKMLVGEVFGSCCQLKGSDSITKFMIVLHNALGGHDTDRFPFSFLDRYGKHVQAFLTANKRVNMDGQIIGAFCFLQIVSPELQQALKAQRQQEKNSFARMKELAYICQGVKNPLSGIRFTNSLLEATCLSNEQKQFLETSAACEKQMLKIIHDVDIESIEDGSLELEKGEFLLGNVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLSDFLLNIVRYAPSPDGWVEIHVHPRIKQISDGLTLLHAEFRMVCPGEGLPPELIQNMFNNSGWGTQEGLGLSMSRKILKLMNGEVQYIREAQRCKIKFKALALPLMLTIR 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01305 1147 Pfam GAF domain 249 426 IPR003018 GO:0005515
Gma15g01305 1147 SMART HKATPase_4 1028 1141 IPR003594 -
Gma15g01305 1147 Gene3D - 431 604 IPR043150 -
Gma15g01305 1147 Pfam Phytochrome region 439 613 IPR013515 GO:0006355|GO:0009584
Gma15g01305 1147 MobiDBLite consensus disorder prediction 1 48 - -
Gma15g01305 1147 Gene3D - 899 978 - -
Gma15g01305 1147 ProSiteProfiles Histidine kinase domain profile. 923 1144 IPR005467 -
Gma15g01305 1147 SMART pas_2 643 710 IPR000014 -
Gma15g01305 1147 SMART pas_2 774 844 IPR000014 -
Gma15g01305 1147 SMART pas_2 101 171 IPR000014 -
Gma15g01305 1147 CDD PAS 652 759 IPR000014 -
Gma15g01305 1147 SUPERFAMILY PYP-like sensor domain (PAS domain) 646 755 IPR035965 -
Gma15g01305 1147 Gene3D PAS domain 636 769 - -
Gma15g01305 1147 PRINTS Phytochrome signature 348 369 IPR001294 GO:0006355|GO:0009584
Gma15g01305 1147 PRINTS Phytochrome signature 541 560 IPR001294 GO:0006355|GO:0009584
Gma15g01305 1147 PRINTS Phytochrome signature 163 185 IPR001294 GO:0006355|GO:0009584
Gma15g01305 1147 PRINTS Phytochrome signature 574 592 IPR001294 GO:0006355|GO:0009584
Gma15g01305 1147 PRINTS Phytochrome signature 737 754 IPR001294 GO:0006355|GO:0009584
Gma15g01305 1147 PRINTS Phytochrome signature 456 476 IPR001294 GO:0006355|GO:0009584
Gma15g01305 1147 PRINTS Phytochrome signature 263 282 IPR001294 GO:0006355|GO:0009584
Gma15g01305 1147 PRINTS Phytochrome signature 644 660 IPR001294 GO:0006355|GO:0009584
Gma15g01305 1147 PRINTS Phytochrome signature 663 678 IPR001294 GO:0006355|GO:0009584
Gma15g01305 1147 PRINTS Phytochrome signature 757 777 IPR001294 GO:0006355|GO:0009584
Gma15g01305 1147 SMART gaf_1 248 436 IPR003018 GO:0005515
Gma15g01305 1147 SUPERFAMILY GAF domain-like 434 611 - -
Gma15g01305 1147 Pfam PAS fold 97 215 IPR013654 GO:0006355
Gma15g01305 1147 SUPERFAMILY GAF domain-like 228 423 - -
Gma15g01305 1147 CDD HATPase_Phy-like 1027 1131 IPR044767 -
Gma15g01305 1147 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 991 1129 IPR036890 -
Gma15g01305 1147 TIGRFAM sensory_box: PAS domain S-box protein 648 763 IPR000014 -
Gma15g01305 1147 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 248 416 IPR016132 -
Gma15g01305 1147 Gene3D PAS domain 101 351 - -
Gma15g01305 1147 Pfam PAS fold 775 894 IPR013767 GO:0006355
Gma15g01305 1147 Pfam PAS fold 644 759 IPR013767 GO:0006355
Gma15g01305 1147 ProSiteProfiles PAS repeat profile. 641 712 IPR000014 -
Gma15g01305 1147 CDD HisKA 916 972 IPR003661 GO:0000155|GO:0007165
Gma15g01305 1147 MobiDBLite consensus disorder prediction 12 26 - -
Gma15g01305 1147 PIRSF Phytochrome_conventional 30 1144 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Gma15g01305 1147 Gene3D - 979 1139 IPR036890 -
Gma15g01305 1147 SMART HisKA_10 916 980 IPR003661 GO:0000155|GO:0007165
Gma15g01305 1147 PANTHER PHYTOCHROME 39 1143 - -
Gma15g01305 1147 PANTHER TWO-COMPONENT HISTIDINE KINASE 39 1143 - -
Gma15g01305 1147 ProSiteProfiles PAS repeat profile. 775 827 IPR000014 -
Gma15g01305 1147 Pfam His Kinase A (phospho-acceptor) domain 920 980 IPR003661 GO:0000155|GO:0007165
Gma15g01305 1147 ProSitePatterns Phytochrome chromophore attachment site signature. 348 357 IPR013516 -
Gma15g01305 1147 SUPERFAMILY PYP-like sensor domain (PAS domain) 789 892 IPR035965 -
Gma15g01305 1147 Gene3D - 229 587 IPR029016 -
Gma15g01305 1147 Gene3D PAS domain 788 898 - -
Gma15g01305 1147 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1028 1136 IPR003594 -
Gma15g01305 1147 SUPERFAMILY PYP-like sensor domain (PAS domain) 102 216 IPR035965 -
Gma15g01305 1147 CDD PAS 786 894 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01305 Gma-Chr15 11567251 11573392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01305 24 1146 Histidine Kinase Gene Family AT4G16250 73.016 0.0 1737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01305 K12121 - gmx:100794865 2207.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01305 15 11567251 11573392 Gma15g01305 15 11567251 11573392 ECH
Gma15g01305 15 11567251 11573392 Gma09g00319 09 2988233 2994902 GST