Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01276 ATGGAAGTGAAAGGAAGGATAAGCAACTCCACCATCACCACCACCACAATCCAAAGTgaggatgagatggaccttcgaagaggtccttggaccgtcgatgaggatcttgctctcatcaattacattgctaatcatggtgaaggTCGATGGAACTCCCTAGCTCGTTCAGCTGGACTCAAACGAACTGGCAAGAGCTGCAGATTGAGATGGTTGAATTATTTGCGTCCCGATGTTCGACGTGGCAACATCACACTTGAAGAACAGCTTCTTATTCTCGAGCTCCATGGTCGCTGGGGAAACCGATGGTCTAAAATTGCTCAATATTTGCCTGGAAGAACCGATAATGAGATAAAGAATTATTGGAGAACCCGTGTCCAAAAGCAAGCCAAGCAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGATGCCATGCGCTACCTTTGGATGCCAAGGCTGGTGGAGCGCATTCAAGCCGCCGCCGCGGCCGCCACCACTGCCACGGCCACCGTGGGTTCTCCAACGGCATCAGCTAGTGCTACTACAACCATCACCACTAACAACAACGCCACCACATACAACTACGAGAACAACAACAACAACAACCTTAACAACAGTTTTGAAGTGCACAGTGGGAACATGATGTTGAGAAATCCAGCAATCATGAACATTAATAATTTTGTTGGTTCACACAGTTACACTCCAGAGAATAATAGCACGGGTGCCTCATCGGATTCATTTGGTGCTCAGGTTTCGCCTGTCTCGGACTTGACTCAGGATTATTACAATAATGTCACGGTTGAGAATAATAACAACAACAATAACCCTAATCCTGAGTATTACCAACAAGCACATGATCAATTGAGTTTCTTAGACTGCATCACAAGCCCTTCAGGGTTGTTCGATTTCCAGTCCATGGAACCAAACACCCCGTGGATTCAGAGTAATGTTGGGGACACGTCAACCAACGGTTTCTGGAATGTTGAAAACATGTTGCTCTTTCAACAACTCTCTGACAACATGTGA 1026 0.4201 MEVKGRISNSTITTTTIQSEDEMDLRRGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHGRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKQAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAAAATTATATVGSPTASASATTTITTNNNATTYNYENNNNNNLNNSFEVHSGNMMLRNPAIMNINNFVGSHSYTPENNSTGASSDSFGAQVSPVSDLTQDYYNNVTVENNNNNNNPNPEYYQQAHDQLSFLDCITSPSGLFDFQSMEPNTPWIQSNVGDTSTNGFWNVENMLLFQQLSDNM 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01276 341 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Gma15g01276 341 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Gma15g01276 341 SMART sant 79 127 IPR001005 -
Gma15g01276 341 SMART sant 26 76 IPR001005 -
Gma15g01276 341 CDD SANT 95 123 IPR001005 -
Gma15g01276 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Gma15g01276 341 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Gma15g01276 341 Gene3D - 24 80 - -
Gma15g01276 341 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Gma15g01276 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Gma15g01276 341 PANTHER MYB TRANSCRIPTION FACTOR 2 338 - -
Gma15g01276 341 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Gma15g01276 341 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 338 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma15g01276 341 Gene3D - 84 147 - -
Gma15g01276 341 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01276 Gma-Chr15 11249004 11250870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01276 20 328 MYB Transcription Factor Family AT3G06490 53.681 2.39e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma15g01276 Myb_DNA-binding 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01276 K09422 - gmx:100305347 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01276 15 11249004 11250870 Gma15g01276 15 11249004 11250870 ECH
Gma15g01276 15 11249004 11250870 Gma09g00292 09 2724212 2726654 GST