Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01225 ATGGATTCTTCAATGGCAAGTGTTGGTGGCTCTGGTGATGAAGGCTCTGACAACTTCAACCAGGGAAGAAGACCCTCCTACAAACGTCTCACTTCTGCTCAAACAGCCAGACTTGAAAGATTCATCAAGGATTGCCCACACCCCGACGAAGCCCAACGACGTCAATTAGCTTCTGAGATTGGGCTTGAGACTAAACAAGTAAAGTTTTGGTTTCAGAATAAGAGGACCCAAATCAAGAATCAACACGAGCGAGCAGATAACACTGCTCTTCGGGTTGAGAATGATAGGATACATAGTAAAAACCTTCTAATGAAAAAGGCATTGAAGAATATGCTTTGCCCATCTTGTGGGGGTGCACCGTGTCAAGATGATCGTGAACATTTAATGCAAAAGATGCAACATGAAAATTCTCGGCTAAAAGAAGAGCATGAGAAAGTGTCTAGCCTTCTTGCAAGGTACTTGGAGAAACAAATGTCACCGCCTGAGTTCCAACAGGTTTTTAATATTCCTATCATAGGATCAAGTTCACATGCTCCAAAACTTGAAAATTCATCACTAAACTATGAAATTGGTGGAAGTTCAAGTCATGGTCCAAGTCTTTATGGTATGCAAATTATGGATGGTCATGACCATAACTTAATGGGAAGTGAAGGTATAGAGAAGACCCTGATGTTGAAGGTTGCTGCTTCCGCAATGGAGGAATTGGTTAGGCTTATTCGGATTAATGAGCCCTGTTGGATCAAGTCTTCAACTCAAGATGGACAGCTCATTCTTCAGCATGAAAATTATGAGAAAATGTTCCCAAGGACCAATAATTTCAAAGGTGTCAATCTGCGTGTAGAAGCAACAAAAGATTCAGGAATAGTGAGCATTAATAGCATTCAACTAGTTGACATGTTTCTGGATTCGGACAAATGGATTAATTTGTTCCCAACAATTGTTACAAAAGCAAAAACAATAAAGGTACTTGAAAATGGTTTGGTAGGAAGTCGAAGTGGAGCCTTGCAGCTGATGTTTGAACAAATGCATGTTCTTTCACCTTTGGTGCAACCTCGCGAGTTTCAATTCCTTCGCTATTGTGAGCAAATTGAAGAAGGTGTATGGGTGATAGCAGATGTGTCATTTGATTCCTTTCGACAAAAAACCTCTTTTTTTCACTCTTGGAGACATCCCTCTGGATGCATGATTCAAGAAATGCCTAATGGTTGTTCCATGGTTACTTGGGTTGAACATGTGGAAGTGGATGATAAGATCCAAACTCATCAGCTATACAAAGACCTTATTGGTACAGGAATTGCATACGGAACAGAAAGATGGATTATGGAACTTCAAAGAATTGGCGAGAGATTTGCTTGCTTTTATGTTGAAAGGATACCTATTCAAGACTCTGGAGGAGTGATCAATTCTCTTGAAGGAAGGAGGAGTGTGATGAATTTTTGTCATCGTATGATCAAAGTCTTTTGTGAAAGTTTAACCATGTCAGGTAACTTGGACTTCCCACTTTTGAAAATGGAGAACAATAGCGGGGTGAGGGTTTCTATTCGCAAAAACAGAAACCACCTTGGTCAACCAAAGGGCGTGATTGTTGTAGCTGCTACCTCCATTTGGCTTCCTCTCCATTATATGAAAGTTTTTGAGTTCTTGACAGATGATAGAAGACGTGCTCAGTGGGATGTTCTTTGCTGTGGAAATAACGCGAACAAGGTTGCACACATCTCAAATGGAATTCATCCTGGCAATTGCATATCTATTTCTCGGCCATTCATCCCTAGCGAGAACAATGCACTGATTCTTCAAGAGAGTTTCACAACTCCCATGGGATCGTATGTTGTATATGCTCCAACCGACGTAGCAAGTATGATTTCGGCCATAAACGGAGAAGACTCTTCAATGCTACCAGTTCTTCCATCAGGTTTTGTCATCTCTGCAGATGGTGAACCAAATGCAGCTTTGGAAGCATTTAACAGTTCAGATATTGAAAGATTAGGAGGCTCATTGCTGACTGTGGCTTTCCAAATACTTGCTTCAAGTCCAGATGGAATCAATATGCCAAACATGGAATCTGTGGCAGCTGTGAACTCCCTTTTAACCTCAACAATCCTAAAAGTCAAGGATGCTTTGAATTGCAACAACTTGGAGTGA 2142 0.4094 MDSSMASVGGSGDEGSDNFNQGRRPSYKRLTSAQTARLERFIKDCPHPDEAQRRQLASEIGLETKQVKFWFQNKRTQIKNQHERADNTALRVENDRIHSKNLLMKKALKNMLCPSCGGAPCQDDREHLMQKMQHENSRLKEEHEKVSSLLARYLEKQMSPPEFQQVFNIPIIGSSSHAPKLENSSLNYEIGGSSSHGPSLYGMQIMDGHDHNLMGSEGIEKTLMLKVAASAMEELVRLIRINEPCWIKSSTQDGQLILQHENYEKMFPRTNNFKGVNLRVEATKDSGIVSINSIQLVDMFLDSDKWINLFPTIVTKAKTIKVLENGLVGSRSGALQLMFEQMHVLSPLVQPREFQFLRYCEQIEEGVWVIADVSFDSFRQKTSFFHSWRHPSGCMIQEMPNGCSMVTWVEHVEVDDKIQTHQLYKDLIGTGIAYGTERWIMELQRIGERFACFYVERIPIQDSGGVINSLEGRRSVMNFCHRMIKVFCESLTMSGNLDFPLLKMENNSGVRVSIRKNRNHLGQPKGVIVVAATSIWLPLHYMKVFEFLTDDRRRAQWDVLCCGNNANKVAHISNGIHPGNCISISRPFIPSENNALILQESFTTPMGSYVVYAPTDVASMISAINGEDSSMLPVLPSGFVISADGEPNAALEAFNSSDIERLGGSLLTVAFQILASSPDGINMPNMESVAAVNSLLTSTILKVKDALNCNNLE 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01225 713 SMART START_1 226 449 IPR002913 GO:0008289
Gma15g01225 713 Gene3D - 225 428 IPR023393 -
Gma15g01225 713 Gene3D - 12 96 - -
Gma15g01225 713 SUPERFAMILY Homeodomain-like 20 85 IPR009057 -
Gma15g01225 713 Pfam Homeodomain 26 79 IPR001356 GO:0003677
Gma15g01225 713 SUPERFAMILY Bet v1-like 220 450 - -
Gma15g01225 713 Coils Coil 125 156 - -
Gma15g01225 713 Pfam START domain 227 448 IPR002913 GO:0008289
Gma15g01225 713 SUPERFAMILY Bet v1-like 472 673 - -
Gma15g01225 713 CDD START_ArGLABRA2_like 221 445 - -
Gma15g01225 713 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Gma15g01225 713 SMART HOX_1 23 85 IPR001356 GO:0003677
Gma15g01225 713 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Gma15g01225 713 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 709 IPR042160 -
Gma15g01225 713 MobiDBLite consensus disorder prediction 1 32 - -
Gma15g01225 713 ProSiteProfiles START domain profile. 217 452 IPR002913 GO:0008289
Gma15g01225 713 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 18 709 - -
Gma15g01225 713 CDD homeodomain 23 82 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01225 Gma-Chr15 10687233 10693493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01225 23 708 Homeobox Transcription Factor Family AT1G73360 44.180 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma15g01225 START 2e-35 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01225 K09338 - gmx:100795075 1276.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01225 15 10687233 10693493 Gma09g00239 09 2160448 2166447 GST