Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01216 ATGCCTCCCAAATCTGCCAAATCCAAGGAAGCTCCAGCTGAGCGACCCATCCTCGGTCGATTCTCTTCTCACCTCAAAATTGGCATTGTTGGCTTGCCAAATGTTGGAAAATCTACTCTCTTTAATACTCTCACCAAGTTGGCAATACCTGCTGAGAACTTCCCCTTTTGCACCATTGAGCCTAATGAGGCGCGGGTCAATGTACCCGATGAACGGTTTGAGTGGCTTTGCCAATTATTCAAGCCAAAAAGTGAGGTCTCGGCTTTCTTAGAAATCCATGACATAGCTGGATTGGTCCGAGGTGCTCATCAGGGGCAAGGATTGGGGAATAGTTTTTTATCTCACATCCGTGCTGTGGATGGCATTTTCCATGTTCTACGTGCATTTGAGGATCCGGACATTATTCATGTTGATGATACTGTTGATCCAGTCAGGGATTTAGAGGTCATTACTGAAGAATTGCGGCTGAAGGATATTGAATTCATGGAAAGAAAGATAGAAGATATTGAGAAAAGCATGAAGAGGAGCAATGACAAGCAGCTAAAAATCGAGCTCGAATGTTGTCAAAGGGTGAAGGCATTGCTTGAGGAAGGAAAAGATATACGTCTAGGGGATTGGAAGGCTGCTGATATTGAGATTTTGAATTCCTTTCAGTTGCTAACTGCCAAGCCTGTTGTATACTTGGTTAATATGACCGAAAAAGATTACCAAAGAAAAAAAAACAAGTTTCTGCCCAAAATTCATGCATGGGTCCAGGAGCACGGGGGTGAGACTATTATTCCTTTCAGCTGTGCCTTGGAAAGGAATCTTGCAGATATGCCACCAGATGAAGCGGCTAAGTATTGTGAGGAGAACAAAACTCAAAGTGCTCTTACCAAAATAATAAAGACTGGATTTTCAGCTATTAATCTCATTTACTTTTTCACAGCAGGACCTGATGAGGTTAAGTGTTGGCAAATTAGACGCCAAACAAAGGCTCCTCAAGCTGCAGGGGCTATCCATACTGATTTTGAAAGAGGATTTATTTGTGCTGAGGTGATGAAGTTTGAGGATCTAAAGGAACTTGGTAGTGAGTCAGCTGTGAAGGCTGCTGGAAAGTATAAACAGGAAGGGAAAACATATGTGGTCCAAGATGGAGACATTATATTCTTTAAGTTCAACGTTTCTGGTGGGGGCAAGAAGTCCAATTTTGATATCGAGAATGAGTGTTTCCTCTTGAGTGATGGCGACGACGATCCTTCAGGCTATAACAGAGGGTTTTGTGGTGGTGATAATGGGATGGTCTCAATGAGGGACGGATTCATACCTGAGGGGAGGGATTTCTGCTACAGTCTACATTGTGCTTTAGGAAGTGTTTTTGGTTACACCATGCAGCTAATGGACAACGAATCTCTTGGAGCTACTAGTTTCCCATCATTTGGTGGTTGTTTAGTTGGGGCACTTGTGGTTTTGAAGAACCCCTCTTTTCGTTTTTGCTGTAAGTCCTTCACTAAGTGTGGATTGAGAAGCTTGAAGACCCAACTCTCTCTTTTGAAGACTGTGTTTGCTTGCTTCTTTTCTAAATTGCTGCTTTCTTTTAGAAGAACCAAAGAAGGGCATCTTGGAATTCTATTTCTTCCTTCTCAGGACATTTTAGCATTGCTGGAGTTTAAGAAAGGCATCAAGCATGACCCTACTGGTTATGTTCTCAATTCCTGGAATGAGGAATCCATTGACTTTGATGGATGCCCATCTTCATGGAATGGAGTTCTGTGCAATGCTGGCAATGTTGCTGGGGTTGTCCTTGATAACTTGGGTCTCTCTGCTGACCCTGACCTGAGTGTGTTTTCAAATCTTACAAAGCTTGTGAAACTCTCCATGTCCAACAATTCCATATCAGGAACACTACCTGACAACATTGCTGATTTCAAAAGCCTTGAATTCTTGGATATCTCCAATAACCTCTTTTCCTCATCCTTGCCATTGGGAATTGGTGAGTTACGGAGCTTGCAGAATCTGTCATTGGCTGGAAATAACTTCTCCGGCCCAATTCCTGACTCTATTTCAGAAATGGCCTCCATCAAGTCCCTGGACTTGAGCCGCAACTCCTTCTCTGGAATGCTGCCAGTGACGTTGACTAAGACGACTAGTCTTGTATCTCTTAACTTGTCTCATAATGGCTTCACTGGAAAAGTTCCCAAAGGTTTTGAGCTGATCCCCGCTCTTGAAAAACTTGACTTGCATGGAAATATGCTTGAAGGTAATTTGGATGTTGTATTTATGCTTTTATCAAGTGCCAGCTATGTTGATTTAAGTGAGAACATGCTGTCAAGTTCTGATTCCAAGAAGAAGTTTCTACCACGAATATCTGAAAGTATTAAGCATCTGAATCTAAGCCACAACAAGCTTACTGGGTCATTGGCTAGTGGAGCTGCTGAACCTGTTTTTGAAAACTTGAAGGTGTTGGACCTCAGCTACAATCAGTTGGATGGAGAATTGCCTGGATTTGATTTTGTTTATGATCTTGAAGTTCTTAGACTTAGCAACAACAGATTTTCAGGATTTATTCCTAATGGCCTGCTGAAAGGAGACTCTTTGGTTTTAACTGAATTGGATTTGAGTGCCAACAACCTCTCAGGGCCACTAAGTATAATTACATCAACAACACTTCATTCTCTTAATCTCTCATCAAATGAGTTCACGGGTGATCTGCCGCTGCTGACTGGAAGCTGTGCTGTACTTGATCTGTCAAACAACAAATTAGAAGGAAACTTGACCAGGATGTTGAAATGGGGGAATATAGAATTTCTTGATCTCAGTGGGAATCATTTGACGGGGACCATCCCTGAGGAAACTCCTCAATTTTTGCGATTGAGTTATTTGAACCTATCCCATAATTCTCTAAGCAGCTCCCTTCCAAAAGTCTTAACACAGTATCCAAAGCTTAGAGTGCTCGACATTAGTTTCAACCAATTGGATGGACTACTTCTAGCTAATCTGCTCACACTGTCCACATTGCAAGAGCTGCACCTTGAAAATAATATGATCTCTGGTGGCATCAAGTTTTCATCTTCTGCTGACCAATCTGATCTTCAGATTCTTGATCTTTCTCACAACCAGCTTAATGGCTATTTTCCTGATGAGTTTGGGTCATTAACTGGCCTGAAAGTGCTAAATATTGCTGGAAATAATTTTTCTGGTTCTCTTCCAACTACCATTGCTGACATGAGTTCACTAGACTCCCTGGATATATCAGAGAATCATTTTGCTGGTCCTCTACCAAGTAACATCCCAAAGGGGCTCCAAAACTTTAATGCTTCACAAAATGATCTGTCAGGACTTGTCCCGGAAGTTCTTAGAAAGTTTCCTAGTTCTTCTTTCTTTCCTGGGAATACCAAGTTACATTTTCCAAATGGTCCTCCTGGATCAGTCAGTTCACCTGCTAAAAGTTCCAAGAGGAAGCATATGAACACCATAGTTAAAGTCATAATCATAGTGTCATGCGTGGTTGCACTCTTCATATTAATCTTGCTTGCTGTCTTCATACACTACATACGTATATCAAGATCTCCACAAGAATATGATGCAAGTAAGGATATCCACAGGCATCCTCAACCAATTATCTCGGCTCCTGTTCGTACGACTGATAGGGGTGGTGCTTTGGTTGTTTCAGCTGAGGACCTTGTGACCTCACGCAAAGAGTCACCATCGGAGATTATCAGCTCTGACGAAAAAATGGCAGCTGTAACGGGGTTCTCTCCATCAAAACAAAGCCACTTTTCATGGTCACCAGAATCTGGTGATTCACTTACTGGTGAAAATCTTGCAAGACTAGATACGAGATCGCCAGATCGGTTGATTGGTGAGCTGCATTTTCTGGATGATACGATAACATTGACACCTGAGGAGCTCTCAAGGGCCCCAGCTGAAGTTTTGGGAAGAAGTAGTCATGGTACTTCTTACAAGGCAACTCTGGAGAATGGTTTGTTGTTGAGAGTGAAGTGGTTGAGAGAAGGAGTGGCAAAACAGAGAAAAGAATTTGTCAAGGAGATGAAGAAATTTGCAAACATCAGACATCCAAATGTTGTAGGATTGAGAGGATATTATTGGGGTCCTACACAGCATGAAAAGCTTATACTTTCAGATTACATCTCACCCGGAAGTCTTGCTAGTTTTCTTTATGATCGACCAGGAAGAAAAGGTCCACCACTAACTTGGGCCCAGAGGCTCAAAATAGCAGTCGATGTAGCACGTGGTCTGAACTATCTCCATTTTGATCGTGCTGTTCCTCACGGGAATCTCAAAGCTACAAATGTGTTGTTAGATACAACTGATATGAATGCACGTGTCGCCGATTACTGCCTTCACCGACTCATGACTCGAGCTGGTAACATTGAACAGATTCTTGATGCTGGGGTCTTGGGTTATCGTGCACCAGAGTTAGCTGCTTCCAAGAAGCCAATGCCCTCCTTCAAGTCAGATGTTTATGCTTTTGGAGTGATACTTTTGGAACTTCTAACTGGAAGGTGTGCTGGTGATGTTATATCTAGTGAGGAGGGAGGTGTTGATCTGACAGATTGGGTAAGGTTGCGCGTAGCAGAAGGCCGAGGCTCAGAATGTTTTGATGCTACCTTGATGCCAGAAATGAGCAATCCAATTGCAGAAAAGGGAATGAAGGAGGTCCTGGGAATAGTGATGCGGTGCATTCGGTCTGTTTCTGAAAGGCCTGGTATCAAGACTATTTATGAAGATCTCTCTTCTATATAA 4746 0.4252 MPPKSAKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNVPDERFEWLCQLFKPKSEVSAFLEIHDIAGLVRGAHQGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDTVDPVRDLEVITEELRLKDIEFMERKIEDIEKSMKRSNDKQLKIELECCQRVKALLEEGKDIRLGDWKAADIEILNSFQLLTAKPVVYLVNMTEKDYQRKKNKFLPKIHAWVQEHGGETIIPFSCALERNLADMPPDEAAKYCEENKTQSALTKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGAIHTDFERGFICAEVMKFEDLKELGSESAVKAAGKYKQEGKTYVVQDGDIIFFKFNVSGGGKKSNFDIENECFLLSDGDDDPSGYNRGFCGGDNGMVSMRDGFIPEGRDFCYSLHCALGSVFGYTMQLMDNESLGATSFPSFGGCLVGALVVLKNPSFRFCCKSFTKCGLRSLKTQLSLLKTVFACFFSKLLLSFRRTKEGHLGILFLPSQDILALLEFKKGIKHDPTGYVLNSWNEESIDFDGCPSSWNGVLCNAGNVAGVVLDNLGLSADPDLSVFSNLTKLVKLSMSNNSISGTLPDNIADFKSLEFLDISNNLFSSSLPLGIGELRSLQNLSLAGNNFSGPIPDSISEMASIKSLDLSRNSFSGMLPVTLTKTTSLVSLNLSHNGFTGKVPKGFELIPALEKLDLHGNMLEGNLDVVFMLLSSASYVDLSENMLSSSDSKKKFLPRISESIKHLNLSHNKLTGSLASGAAEPVFENLKVLDLSYNQLDGELPGFDFVYDLEVLRLSNNRFSGFIPNGLLKGDSLVLTELDLSANNLSGPLSIITSTTLHSLNLSSNEFTGDLPLLTGSCAVLDLSNNKLEGNLTRMLKWGNIEFLDLSGNHLTGTIPEETPQFLRLSYLNLSHNSLSSSLPKVLTQYPKLRVLDISFNQLDGLLLANLLTLSTLQELHLENNMISGGIKFSSSADQSDLQILDLSHNQLNGYFPDEFGSLTGLKVLNIAGNNFSGSLPTTIADMSSLDSLDISENHFAGPLPSNIPKGLQNFNASQNDLSGLVPEVLRKFPSSSFFPGNTKLHFPNGPPGSVSSPAKSSKRKHMNTIVKVIIIVSCVVALFILILLAVFIHYIRISRSPQEYDASKDIHRHPQPIISAPVRTTDRGGALVVSAEDLVTSRKESPSEIISSDEKMAAVTGFSPSKQSHFSWSPESGDSLTGENLARLDTRSPDRLIGELHFLDDTITLTPEELSRAPAEVLGRSSHGTSYKATLENGLLLRVKWLREGVAKQRKEFVKEMKKFANIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRKGPPLTWAQRLKIAVDVARGLNYLHFDRAVPHGNLKATNVLLDTTDMNARVADYCLHRLMTRAGNIEQILDAGVLGYRAPELAASKKPMPSFKSDVYAFGVILLELLTGRCAGDVISSEEGGVDLTDWVRLRVAEGRGSECFDATLMPEMSNPIAEKGMKEVLGIVMRCIRSVSERPGIKTIYEDLSSI 1581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01216 1581 Hamap Ribosome-binding ATPase YchF [ychF]. 24 388 IPR004396 GO:0005524|GO:0005525|GO:0016887
Gma15g01216 1581 Pfam Leucine Rich repeat 811 825 IPR001611 GO:0005515
Gma15g01216 1581 Pfam Protein of unknown function (DUF933) 304 387 IPR013029 -
Gma15g01216 1581 Gene3D - 70 387 IPR012675 -
Gma15g01216 1581 Pfam 50S ribosome-binding GTPase 26 140 IPR006073 GO:0005525
Gma15g01216 1581 TIGRFAM TIGR00092: GTP-binding protein YchF 25 388 IPR004396 GO:0005524|GO:0005525|GO:0016887
Gma15g01216 1581 Coils Coil 159 179 - -
Gma15g01216 1581 CDD TGS_YchF_OLA1 302 386 IPR013029 -
Gma15g01216 1581 Gene3D - 135 223 IPR023192 -
Gma15g01216 1581 SUPERFAMILY TGS-like 304 385 IPR012676 -
Gma15g01216 1581 Pfam Protein tyrosine and serine/threonine kinase 1303 1503 IPR001245 GO:0004672|GO:0006468
Gma15g01216 1581 ProSiteProfiles Leucine-rich repeat profile. 811 833 IPR001611 GO:0005515
Gma15g01216 1581 Gene3D Phosphorylase Kinase; domain 1 1291 1376 - -
Gma15g01216 1581 Gene3D Transferase(Phosphotransferase) domain 1 1378 1581 - -
Gma15g01216 1581 SUPERFAMILY L domain-like 966 1117 - -
Gma15g01216 1581 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 25 282 IPR031167 GO:0005525
Gma15g01216 1581 CDD YchF 27 301 IPR041706 -
Gma15g01216 1581 Gene3D - 25 303 IPR027417 -
Gma15g01216 1581 SMART LRR_typ_2 1022 1044 IPR003591 -
Gma15g01216 1581 SMART LRR_typ_2 832 856 IPR003591 -
Gma15g01216 1581 SMART LRR_typ_2 732 755 IPR003591 -
Gma15g01216 1581 SMART LRR_typ_2 1045 1068 IPR003591 -
Gma15g01216 1581 SMART LRR_typ_2 948 971 IPR003591 -
Gma15g01216 1581 SMART LRR_typ_2 612 635 IPR003591 -
Gma15g01216 1581 SMART LRR_typ_2 809 831 IPR003591 -
Gma15g01216 1581 SMART LRR_typ_2 636 660 IPR003591 -
Gma15g01216 1581 SMART LRR_typ_2 1069 1093 IPR003591 -
Gma15g01216 1581 SMART LRR_typ_2 684 707 IPR003591 -
Gma15g01216 1581 Gene3D Ribonuclease Inhibitor 707 779 IPR032675 -
Gma15g01216 1581 Gene3D Ribonuclease Inhibitor 656 706 IPR032675 -
Gma15g01216 1581 Gene3D Ribonuclease Inhibitor 543 655 IPR032675 -
Gma15g01216 1581 ProSiteProfiles Protein kinase domain profile. 1299 1581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma15g01216 1581 SUPERFAMILY RNI-like 597 1001 - -
Gma15g01216 1581 Pfam Leucine rich repeat N-terminal domain 541 586 IPR013210 -
Gma15g01216 1581 Gene3D Ribonuclease Inhibitor 780 1144 IPR032675 -
Gma15g01216 1581 PANTHER OS07G0626500 PROTEIN 538 1581 - -
Gma15g01216 1581 PANTHER - 538 1581 - -
Gma15g01216 1581 PRINTS GTP1/OBG GTP-binding protein family signature 48 66 IPR006073 GO:0005525
Gma15g01216 1581 PRINTS GTP1/OBG GTP-binding protein family signature 92 107 IPR006073 GO:0005525
Gma15g01216 1581 PRINTS GTP1/OBG GTP-binding protein family signature 27 47 IPR006073 GO:0005525
Gma15g01216 1581 PRINTS GTP1/OBG GTP-binding protein family signature 109 127 IPR006073 GO:0005525
Gma15g01216 1581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 326 IPR027417 -
Gma15g01216 1581 SUPERFAMILY Protein kinase-like (PK-like) 1302 1578 IPR011009 -
Gma15g01216 1581 Pfam Leucine rich repeat 661 720 IPR001611 GO:0005515
Gma15g01216 1581 Pfam Leucine rich repeat 930 985 IPR001611 GO:0005515
Gma15g01216 1581 Pfam Leucine rich repeat 1024 1082 IPR001611 GO:0005515
Gma15g01216 1581 ProSiteProfiles TGS domain profile. 303 386 IPR004095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01216 Gma-Chr15 10595967 10618475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01216 547 1569 Receptor kinase-like Gene Family AT1G55610 27.412 9.51e-78 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gma15g01216 PK_Tyr_Ser-Thr 1.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01216 - - gmx:100793639 1974.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01216 15 10595967 10618475 Gma15g01216 15 10595967 10618475 ECH
Gma15g01216 15 10595967 10618475 Gma09g00229 09 2056251 2062513 GST