Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01208 ATGATAGCAGCACTTCAATTCAATTCAATTAACGAACTGCAGCACTTACTTCTTCGCTTTTGCCTTTTTTTCTTCAACTGCTCTGTAACCGAAAACCACCCTTTGCCAGTTTTGAATCTTTTGTTTCTGGTTTTGGTTACAGTTTTTCCGAGCCTTGCTATTCATTATTGTCCTTCGAATCGGATTGATTTGGACACTGCATTGCATGTAAATCAGGAAATCATGACTACATCTACTCGTGACATCTCAGATAATGAAGCTGATGAGCAGCAGCAGTCGGAACCACAAATGCAGCATTTATCTGCAAATGGAATTTCTCATGCAGGTATTGGTACTCAGAATGTTCAGTATGCAACACCTCCGCAGCTTGGAACTGGGCATGCTGTGGTACCACCCACTTACCCATATCCAGATCCATACTACAGAAGTATCTTTGCTCCCTATGATGCACAAACTTATCCCCCACAACCTTATGGTGGAAACCCAATGGTCCACCTTCAGTTAATGGGAATTCAACAAGCAGGTGTTCCTTTGCCAACTGATACAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTAAGACGCAGGCAGTCCCGTGCTAAAGCTGAATCAGAAAAAAAAGCTGCAAGGAATCGAAAGCCATACTTGCATGAATCTCGACATTTGCATGCACTAAGAAGAGCAAGAGGATGTGGAGGTCGGTTTTTGAATTCAAAGAAAGATGAGAATCAACAGGATGAGGTAGCATCAACTGACGAATCACAGTCCAATATCAATCTCAATTCTGATAAAAATGAGCTTGCACCATCAGATAGAACATCCTAA 840 0.4167 MIAALQFNSINELQHLLLRFCLFFFNCSVTENHPLPVLNLLFLVLVTVFPSLAIHYCPSNRIDLDTALHVNQEIMTTSTRDISDNEADEQQQSEPQMQHLSANGISHAGIGTQNVQYATPPQLGTGHAVVPPTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPLPTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKAARNRKPYLHESRHLHALRRARGCGGRFLNSKKDENQQDEVASTDESQSNINLNSDKNELAPSDRTS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01208 279 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 185 240 IPR001289 GO:0003700|GO:0006355
Gma15g01208 279 MobiDBLite consensus disorder prediction 201 217 - -
Gma15g01208 279 MobiDBLite consensus disorder prediction 238 279 - -
Gma15g01208 279 ProSitePatterns NF-YA/HAP2 subunit signature. 188 208 IPR018362 GO:0003677|GO:0016602
Gma15g01208 279 PRINTS CCAAT-binding transcription factor subunit B signature 217 240 IPR001289 GO:0003700|GO:0006355
Gma15g01208 279 PRINTS CCAAT-binding transcription factor subunit B signature 186 208 IPR001289 GO:0003700|GO:0006355
Gma15g01208 279 MobiDBLite consensus disorder prediction 254 273 - -
Gma15g01208 279 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 75 262 IPR001289 GO:0003700|GO:0006355
Gma15g01208 279 Gene3D - 183 244 - -
Gma15g01208 279 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 75 262 - -
Gma15g01208 279 MobiDBLite consensus disorder prediction 199 224 - -
Gma15g01208 279 MobiDBLite consensus disorder prediction 78 97 - -
Gma15g01208 279 ProSiteProfiles NF-YA/HAP2 family profile. 183 243 IPR001289 GO:0003700|GO:0006355
Gma15g01208 279 SMART cbf3 182 243 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01208 Gma-Chr15 10518377 10524755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01208 75 279 CCAAT-HAP2 Transcription Factor Family AT1G30500 54.106 7.40e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gma15g01208 CBFB_NFYA 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01208 K08064 - gmx:100809036 407.142