Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma15g01208 | ATGATAGCAGCACTTCAATTCAATTCAATTAACGAACTGCAGCACTTACTTCTTCGCTTTTGCCTTTTTTTCTTCAACTGCTCTGTAACCGAAAACCACCCTTTGCCAGTTTTGAATCTTTTGTTTCTGGTTTTGGTTACAGTTTTTCCGAGCCTTGCTATTCATTATTGTCCTTCGAATCGGATTGATTTGGACACTGCATTGCATGTAAATCAGGAAATCATGACTACATCTACTCGTGACATCTCAGATAATGAAGCTGATGAGCAGCAGCAGTCGGAACCACAAATGCAGCATTTATCTGCAAATGGAATTTCTCATGCAGGTATTGGTACTCAGAATGTTCAGTATGCAACACCTCCGCAGCTTGGAACTGGGCATGCTGTGGTACCACCCACTTACCCATATCCAGATCCATACTACAGAAGTATCTTTGCTCCCTATGATGCACAAACTTATCCCCCACAACCTTATGGTGGAAACCCAATGGTCCACCTTCAGTTAATGGGAATTCAACAAGCAGGTGTTCCTTTGCCAACTGATACAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTAAGACGCAGGCAGTCCCGTGCTAAAGCTGAATCAGAAAAAAAAGCTGCAAGGAATCGAAAGCCATACTTGCATGAATCTCGACATTTGCATGCACTAAGAAGAGCAAGAGGATGTGGAGGTCGGTTTTTGAATTCAAAGAAAGATGAGAATCAACAGGATGAGGTAGCATCAACTGACGAATCACAGTCCAATATCAATCTCAATTCTGATAAAAATGAGCTTGCACCATCAGATAGAACATCCTAA | 840 | 0.4167 | MIAALQFNSINELQHLLLRFCLFFFNCSVTENHPLPVLNLLFLVLVTVFPSLAIHYCPSNRIDLDTALHVNQEIMTTSTRDISDNEADEQQQSEPQMQHLSANGISHAGIGTQNVQYATPPQLGTGHAVVPPTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPLPTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKAARNRKPYLHESRHLHALRRARGCGGRFLNSKKDENQQDEVASTDESQSNINLNSDKNELAPSDRTS | 279 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma15g01208 | 279 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 185 | 240 | IPR001289 | GO:0003700|GO:0006355 | |
Gma15g01208 | 279 | MobiDBLite | consensus disorder prediction | 201 | 217 | - | - | |
Gma15g01208 | 279 | MobiDBLite | consensus disorder prediction | 238 | 279 | - | - | |
Gma15g01208 | 279 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 188 | 208 | IPR018362 | GO:0003677|GO:0016602 | |
Gma15g01208 | 279 | PRINTS | CCAAT-binding transcription factor subunit B signature | 217 | 240 | IPR001289 | GO:0003700|GO:0006355 | |
Gma15g01208 | 279 | PRINTS | CCAAT-binding transcription factor subunit B signature | 186 | 208 | IPR001289 | GO:0003700|GO:0006355 | |
Gma15g01208 | 279 | MobiDBLite | consensus disorder prediction | 254 | 273 | - | - | |
Gma15g01208 | 279 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 75 | 262 | IPR001289 | GO:0003700|GO:0006355 | |
Gma15g01208 | 279 | Gene3D | - | 183 | 244 | - | - | |
Gma15g01208 | 279 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 | 75 | 262 | - | - | |
Gma15g01208 | 279 | MobiDBLite | consensus disorder prediction | 199 | 224 | - | - | |
Gma15g01208 | 279 | MobiDBLite | consensus disorder prediction | 78 | 97 | - | - | |
Gma15g01208 | 279 | ProSiteProfiles | NF-YA/HAP2 family profile. | 183 | 243 | IPR001289 | GO:0003700|GO:0006355 | |
Gma15g01208 | 279 | SMART | cbf3 | 182 | 243 | IPR001289 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma15g01208 | Gma-Chr15 | 10518377 | 10524755 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma15g01208 | 75 | 279 | CCAAT-HAP2 Transcription Factor Family | AT1G30500 | 54.106 | 7.40e-67 | 204 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YA | Gma15g01208 | CBFB_NFYA | 1.3e-25 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma15g01208 | K08064 | - | gmx:100809036 | 407.142 |