Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01170 ATGACTGATGATGCCATGTGTTCTCCAAACGACAAGGACTTGTCGCTGAGTCCTAATCTAGATATCACGATAGATGATGGTTCTCCAAACAATGAACAACTACTTGAGGTTGAGGATGAGGGCAATGAGCTTGAGAATGAATGTGGGCAATTGTTTGAGATTGATGGAAGTGAACCTGAAAACGGGAGGGATGAAACAACAATAGTTGATAGTCATAGTGGAGAATCTCAAGGGAAAGACTGCCCTCCGCCAGTTGTGAGAATGGAGTTTGATACCTATGATGATGCCTACAACTATTACAATACCTATGCCAAGGATATTGGATTTGCTATTCGGGTTAAATCTTCGTGGACCAAACGCAACAGCAAAGAAAAGCGTGGTGCTGTGCTGTGCTGCAACTGTGAGGGTTTCAAAACAACCAAAGAAGCAAATAGTCATAGGAAAGAAACAAGAACAGGCTGTCTAGCAATGATTAGATTGAGATTAGTGGATTCTAACAGGTGGAGAGTTGATGAAGTCAAGCTTGATCACAACCATTCCTTTGATCCTGAAAGAGCACAAAACTCTAAATCACATAAGAGGATGGACAGTAGGGCCAAAAGAAAAGTTGAGCCAACTTTAGATGTTGAAGTAAGAACAATCAAACTATATCGAATGCCTGTTGTAGATGCATCAGGTTATGGAAGCTCAAATTCTACTGAAGGAGGAACTAGCAACATTAGCTGTTCCAGGCGTTTGAAACTTAAAAAAGgatgcgTAGATGAATTTGAAAGGGCTTGGGATGATTTAACCCAGCATTTTGGAATAAGAAATCACGAAAAGCTCCAAACCTTACATGAGGAACGAGAGCATTGGGCTCCAGTGTACTCCAAAGACACATTTTTTGCTGGAATATCTGATTATGAAAAGGTATTCAGGAAGTTCCAAGATGAGGTGGTAATGATGTCCTCTTGTTTCAGCATCACACAGACTCAAACAAGTGGGTCCATAGTGACATACATGGTAAAAGAACGCGAAGGGGAAGAGCCTGCAAGAGATGCTAGGAATTTTGAAGTCATGTACGATAATGCCGGAGCAGAAGTACGCTGCATTTGTAGTTGCTTTAACTTCAAAGGTTACCTGTGCAGACATGCCTTGTATATCCTTAATTACAATTGTGTGGAGGAAATTCCATGTCAATACATTTTGTCAAGATGGAGGAGGGATTTTAAGCGTTTGTATGTACCTCATCTCAGTGCTGACAATGTTGATATTAGCAACCCGGTTCAGTGTTTTGATCATTTGTACAAACGTGCCATGCAAGTTGTTGAAGAAGGGATGATATCCCAAGATCATTATATGCTTTCTTGGCAAACATTTAAAGAGTCTTTGAATAAGATTCGCCTTGTAGCAGACAAGATTGAATAA 1407 0.4023 MTDDAMCSPNDKDLSLSPNLDITIDDGSPNNEQLLEVEDEGNELENECGQLFEIDGSEPENGRDETTIVDSHSGESQGKDCPPPVVRMEFDTYDDAYNYYNTYAKDIGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTTKEANSHRKETRTGCLAMIRLRLVDSNRWRVDEVKLDHNHSFDPERAQNSKSHKRMDSRAKRKVEPTLDVEVRTIKLYRMPVVDASGYGSSNSTEGGTSNISCSRRLKLKKGCVDEFERAWDDLTQHFGIRNHEKLQTLHEEREHWAPVYSKDTFFAGISDYEKVFRKFQDEVVMMSSCFSITQTQTSGSIVTYMVKEREGEEPARDARNFEVMYDNAGAEVRCICSCFNFKGYLCRHALYILNYNCVEEIPCQYILSRWRRDFKRLYVPHLSADNVDISNPVQCFDHLYKRAMQVVEEGMISQDHYMLSWQTFKESLNKIRLVADKIE 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01170 468 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 253 302 IPR031052 GO:0006355
Gma15g01170 468 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 303 465 - -
Gma15g01170 468 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 253 302 - -
Gma15g01170 468 SMART 26again6 361 388 IPR006564 GO:0008270
Gma15g01170 468 ProSiteProfiles Zinc finger SWIM-type profile. 350 386 IPR007527 GO:0008270
Gma15g01170 468 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 303 465 IPR031052 GO:0006355
Gma15g01170 468 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 31 226 IPR031052 GO:0006355
Gma15g01170 468 MobiDBLite consensus disorder prediction 179 202 - -
Gma15g01170 468 MobiDBLite consensus disorder prediction 1 32 - -
Gma15g01170 468 MobiDBLite consensus disorder prediction 54 83 - -
Gma15g01170 468 MobiDBLite consensus disorder prediction 12 30 - -
Gma15g01170 468 Pfam FAR1 DNA-binding domain 98 182 IPR004330 -
Gma15g01170 468 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 31 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01170 Gma-Chr15 10034475 10037913 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gma15g01170 FAR1 5.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01170 K17604 - gmx:100796448 482.641