Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01116 ATGGCTGAGTCGGACAACGAGTCCGGAGGTCACACGGGGAACGCAAGCGGAAGCAACGAATTCTCCGGTTGCAGGGAGCAAGACAGGTTCCTTCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGTTGCCGGCGAACGCGAAGATCTCGAAGGAGGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATCAGCTTCATAACAGGAGAAGCGTCCGATAAGTGCCAGAAGGAGAAGAGGAAGACGATCAACGGCGATGATCTGCTGTGGGCCATGACCACGCTGGGATTCGAGGAGTACGTGGAGCCTCTCAAGGTTTATCTGCATAACAGCAGCATCAGGGACACGTGTATGGATCTGGAACTACTACTGGATCAGCATCTTCTGCAAGAACTAGATAACAGAAACACACCCGCTCCAGCTTGTAATTGTTGCTTGAAACTTCGTTGTTGA 459 0.5294 MAESDNESGGHTGNASGSNEFSGCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKVYLHNSSIRDTCMDLELLLDQHLLQELDNRNTPAPACNCCLKLRC 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01116 152 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Gma15g01116 152 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Gma15g01116 152 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Gma15g01116 152 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 112 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gma15g01116 152 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gma15g01116 152 Gene3D Histone, subunit A 19 117 IPR009072 GO:0046982
Gma15g01116 152 MobiDBLite consensus disorder prediction 1 23 - -
Gma15g01116 152 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 112 - -
Gma15g01116 152 SUPERFAMILY Histone-fold 27 112 IPR009072 GO:0046982
Gma15g01116 152 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01116 Gma-Chr15 9405514 9406372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01116 1 111 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.956 9.43e-65 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gma15g01116 CBFD_NFYB_HMF 9e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01116 K08065 - gmx:100778034 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01116 15 9405514 9406372 Gma09g00134 09 1073970 1075328 GST