Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01052 ATGGCAGCGTATCAGTGGCAGTGCAGGAAAAGAGAGGGAGAGTTTTCATTGGGAAGTAACAGTTCTGGAACTCCTTCTATCATGCTCCACAACAACAACAACACTGATGATGATAACAACAAAACCAGCACTAACACTGGGTTAGGGTACTATTTCATGGAGAGTGACCACCATCACCGCAACAACAACAACAATGGAAGCTCCTCCTCCTCTTCCTCTTCTGCTGTCAAGGCCAAGATCATGGCTCATCCTCACTATCACCGTCTCTTGGCAGCTTACGTCAATTGTCAGAAGGTTGGAGCCCCACCGGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCTTCTGCAGCGACAATGGCTGGTGATGCAGCAGCAGCAGCTGGATCAAGCTGCATAGGTGAAGATCCAGCTTTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTCACCAAGTATGAGCAAGAACTCTCCAAACCCTTAAAGGAAGCCATGCTCTTCCTTCAAAGGATTGAGTGCCAGTTCAAAAATCTTACAATTTCTTCCACCGACTTTGCTTGCAACGAGGGTGCTGAGAGGAATGGATCATCTGAAGAGGATGTTGATCTACACAACATGATAGATCCCCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTTTGCGCAAGTACAGCGGATACCTGGGCAGTCTGAAGCAAGAATTCATGAAGAAGAGGAAGAAAGGAAAGCTACCTAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCCGAGTCACAGAAGCTGGCCCTTGCAGAGTCGACAGGTCTGGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAGCCATCCACACTATTACATGGATAATGTTCTGGGCAATCCATTTCCCATGGATCTCTCCCATCCAATGCTCTAG 999 0.4715 MAAYQWQCRKREGEFSLGSNSSGTPSIMLHNNNNTDDDNNKTSTNTGLGYYFMESDHHHRNNNNNGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAATMAGDAAAAAGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISSTDFACNEGAERNGSSEEDVDLHNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNVLGNPFPMDLSHPML 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01052 332 SMART ELK_2 214 235 IPR005539 GO:0003677
Gma15g01052 332 Pfam Homeobox KN domain 254 293 IPR008422 GO:0003677|GO:0006355
Gma15g01052 332 ProSiteProfiles 'Homeobox' domain profile. 234 297 IPR001356 GO:0003677
Gma15g01052 332 Pfam KNOX2 domain 131 178 IPR005541 GO:0003677|GO:0005634
Gma15g01052 332 ProSitePatterns 'Homeobox' domain signature. 272 295 IPR017970 GO:0000981|GO:0006355
Gma15g01052 332 MobiDBLite consensus disorder prediction 14 44 - -
Gma15g01052 332 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 22 321 - -
Gma15g01052 332 ProSiteProfiles ELK domain profile. 214 234 IPR005539 GO:0003677
Gma15g01052 332 PANTHER - 22 321 - -
Gma15g01052 332 MobiDBLite consensus disorder prediction 55 74 - -
Gma15g01052 332 Gene3D - 239 301 - -
Gma15g01052 332 Pfam KNOX1 domain 75 114 IPR005540 GO:0003677|GO:0005634
Gma15g01052 332 SUPERFAMILY Homeodomain-like 236 312 IPR009057 -
Gma15g01052 332 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Gma15g01052 332 CDD homeodomain 246 298 IPR001356 GO:0003677
Gma15g01052 332 Pfam ELK domain 214 235 IPR005539 GO:0003677
Gma15g01052 332 SMART KNOX1_2 74 118 IPR005540 GO:0003677|GO:0005634
Gma15g01052 332 SMART HOX_1 236 301 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01052 Gma-Chr15 8848438 8855451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01052 76 332 Homeobox Transcription Factor Family AT1G62360 80.377 2.81e-135 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma15g01052 KNOX2 2.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01052 - - gmx:100805837 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01052 15 8848438 8855451 Gma09g00073 09 550513 557425 GST
Gma17g00091 17 832289 837097 Gma15g01052 15 8848438 8855451 PCT