Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01038 ATGGCCACCTCTCCCACACTACTCTTGCTTTCATGCTTCATACTACACCTTGCATATTCAACAGAAAGTGCAGTTCTAAACAAGATAGACTCTTGCTGGCGTGCCAAATCAAATTGGGCATCAAATCGCCAAGCCTTGGCTAATTGTGGAATTGGCTTTGGCAAAGATTCAATTGGTGGCAAGTATGGATCAATATATAAAGTCACAGATCCCTCTGATGACCCCATAAGCCCAAAACCAGGCACACTTCGTTATGGTGTTATCCAAACACAGCCCCTTTGGATCATTTTTGCCAAAGATATGGTTATTAGGCTCGATAATGAGCTTATCATGAATAGCTACAAGACCATTGATGGAAGAGGTGCTAAAGTGGAGATTGCAAATGGGCCTTGCATTACAATACAAGGTGTTAGCCATGTTATCATACATGGCATTAGCATTCATGATTGCAAACCAAGCAAGGCTGGCCTTGTAAGGAGTACCCCATCTCATCTTGGCCATCGTCGAGGCTCTGATGGGGATGGCATTAGCATATTTGCCTCCTCAAATATTTGGATTGATCATTGCTTTTTGGCTCGTTGTGCTGATGGCTTGATTGATGTTATTCATGCCTCAACTTCCATTACCATTTCTAACAATTACTTTACCCAACATGACAAAGTTATGCTACTAGGACACAGCGACGAATACACAGCAGATAAAAAAATGAAAGTAACAATAGCCTTCAACCGATTTGCTAGTGGTCTGATTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCACATGTGGTGAACAACAAATATGATGGGTGGAAGATGTATGCCATAGGTGGCAGTTCTAACCCAACCATTTTAAGTGAAGGAAACTACTATGTCGCTCCGAATAACCCTGCCACAAAACAGGTTACCAAGAGGGAAATGAAGGGAAAATTGAAAAATTGGAAATGGAGGTCTTCTAAGGATGCATTCTTAAACGGTGCTTATTTTGTTCCATCTGGGTATGGTAGTTGTGACCCAAATTATTCTCCTACTCAATATTTTACTGCTGTACCTGCTTCCTTGGTGCCCGCAATAACTCTTAATGCAGGTCCCTTGACTTGTGTTGTTGGTAAAGCATGTTAA 1122 0.4162 MATSPTLLLLSCFILHLAYSTESAVLNKIDSCWRAKSNWASNRQALANCGIGFGKDSIGGKYGSIYKVTDPSDDPISPKPGTLRYGVIQTQPLWIIFAKDMVIRLDNELIMNSYKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPSKAGLVRSTPSHLGHRRGSDGDGISIFASSNIWIDHCFLARCADGLIDVIHASTSITISNNYFTQHDKVMLLGHSDEYTADKKMKVTIAFNRFASGLIERMPRVRFGYAHVVNNKYDGWKMYAIGGSSNPTILSEGNYYVAPNNPATKQVTKREMKGKLKNWKWRSSKDAFLNGAYFVPSGYGSCDPNYSPTQYFTAVPASLVPAITLNAGPLTCVVGKAC 373
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01038 373 PANTHER PECTATE LYASE 18-RELATED 9 372 IPR045032 GO:0030570
Gma15g01038 373 Gene3D - 26 366 IPR012334 -
Gma15g01038 373 PANTHER PECTATE LYASE 9 372 - -
Gma15g01038 373 SMART amb_all 100 297 IPR002022 -
Gma15g01038 373 PRINTS Pollen allergen Amb family signature 49 66 IPR018082 -
Gma15g01038 373 PRINTS Pollen allergen Amb family signature 72 97 IPR018082 -
Gma15g01038 373 PRINTS Pollen allergen Amb family signature 108 124 IPR018082 -
Gma15g01038 373 PRINTS Pollen allergen Amb family signature 172 193 IPR018082 -
Gma15g01038 373 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Gma15g01038 373 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Gma15g01038 373 PRINTS Pollen allergen Amb family signature 314 338 IPR018082 -
Gma15g01038 373 PRINTS Pollen allergen Amb family signature 344 367 IPR018082 -
Gma15g01038 373 Pfam Pectate lyase 110 291 IPR002022 -
Gma15g01038 373 SUPERFAMILY Pectin lyase-like 27 364 IPR011050 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma15g01038 Gma-Chr15 8749405 8750864 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01038 18 373 Polysaccharide Lyase AT1G11920 69.188 0.0 523
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01038 K01728 - gmx:100799106 766.148
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01038 15 8749405 8750864 Gma15g01038 15 8749405 8750864 ECH
Gma15g01038 15 8749405 8750864 Gma09g00060 09 471547 473193 GST
Gma17g00099 17 901158 903187 Gma15g01038 15 8749405 8750864 PCT