Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01016 ATGTCTTGCTCCAATCTCACAATGTTGGTGTCCTCAAAACCTTCCCTTTCCGATCCCTCCAATCTCTCCTTCCGCTCTGTCCTCAACCCTTTTCAGCTCCCTTCACAAAACCCAACTTCATGCACTCCTTCACGCTCCTCAACCACCCAAATTCAGTGTGGTCTGAGAGAACTCAGAACCCGCATTGATTCCGTGAAGAACACTCAGAAAATCACCGAGGCTATGAAGCTTGTGGCTGCAGCCAAAGTGAGAAGAGCTCAAGAAGCTGTTGTCAACGGAAGACCCTTCTCAGAGACCCTCGTTGAAGTCCTCTACAACATCAACGAGCAGCTCCTAACTGAGGACGTAGACATCCCTCTCACAAAGGTTAGGCCTGTCAAGAAAGTTGCACTTGTTGTGGTCACCGGCGACCGTGGTCTCTGCGGCGGTTTCAACAACGCAATCATAAAGAAAGCTGAGGCTAGAATCAGGGAATTGAAGGAGCTTGGCTTGGAATTCACTGTCATAAGTGTTGGCAAGAAGGAGGTTGACAAGGTGGAGCTTCTATACACCAAGTTCGTGTCGTTGGTGAAATCGGATCCCGTGATTCATACCTTGCTTCCTCTTTCGCCAAAGGGAGAGATTTGTGATGTGAATGGTGTGTGTGTTGATGCTGCTGAGGATGAGTTCTTCAGGTTGACTACCAAGGAAGGAAAGTTGACTGTGGAGAGAGATGTTGTGAGGACTAAAACCGCGGATTTTTCGCCAATTTTGCAGTTTGAACAAGACCCCGTTCAGATCCTTGATGCACTGCTGCCACTGTATTTGAACAGCCAGGTTCTGAGGGCATTGCAGGAGTCCTTGGCGAGTGAACTCGCCGCCAGAATGAGTGCCATGAGCAATGCCACAGATAATGCTATTGAGTTGAAGAAGAACTTGTCCATTGTGTACAATAGGGAGCGCCAGGCTAAGATCACTGGTGAAATTCTGGAAATTGTGGCTGGTGCCAATGCCTTGCAATAG 1002 0.485 MSCSNLTMLVSSKPSLSDPSNLSFRSVLNPFQLPSQNPTSCTPSRSSTTQIQCGLRELRTRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLLTEDVDIPLTKVRPVKKVALVVVTGDRGLCGGFNNAIIKKAEARIRELKELGLEFTVISVGKKEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTKTADFSPILQFEQDPVQILDALLPLYLNSQVLRALQESLASELAARMSAMSNATDNAIELKKNLSIVYNRERQAKITGEILEIVAGANALQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01016 333 PANTHER ATP SYNTHASE GAMMA CHAIN 174 332 IPR000131 GO:0015986|GO:0045261|GO:0046933
Gma15g01016 333 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 174 332 - -
Gma15g01016 333 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 174 - -
Gma15g01016 333 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 54 332 IPR035968 GO:0015986|GO:0045261|GO:0046933
Gma15g01016 333 Gene3D ATP synthase, gamma subunit, helix hairpin domain 56 331 - -
Gma15g01016 333 PRINTS ATP synthase gamma subunit signature 310 331 IPR000131 GO:0015986|GO:0045261|GO:0046933
Gma15g01016 333 PRINTS ATP synthase gamma subunit signature 126 145 IPR000131 GO:0015986|GO:0045261|GO:0046933
Gma15g01016 333 PRINTS ATP synthase gamma subunit signature 279 298 IPR000131 GO:0015986|GO:0045261|GO:0046933
Gma15g01016 333 PANTHER ATP SYNTHASE GAMMA CHAIN 1 174 IPR000131 GO:0015986|GO:0045261|GO:0046933
Gma15g01016 333 Pfam ATP synthase 174 332 IPR000131 GO:0015986|GO:0045261|GO:0046933
Gma15g01016 333 Pfam ATP synthase 55 176 IPR000131 GO:0015986|GO:0045261|GO:0046933
Gma15g01016 333 CDD F1-ATPase_gamma 55 329 IPR000131 GO:0015986|GO:0045261|GO:0046933
Gma15g01016 333 Gene3D - 78 290 - -
Gma15g01016 333 ProSitePatterns ATP synthase gamma subunit signature. 318 331 IPR023632 -
Gma15g01016 333 Hamap ATP synthase gamma chain [atpG]. 52 332 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01016 Gma-Chr15 8562166 8563293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01016 30 333 Primary Pumps ATPases AT1G15700 62.890 4.09e-151 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01016 K02115 - gmx:100037480 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01016 15 8562166 8563293 Gma15g01016 15 8562166 8563293 ECH
Gma15g01016 15 8562166 8563293 Gma13g01793 13 33248527 33250916 ECH
Gma15g01016 15 8562166 8563293 Gma13g01793 13 33248527 33250916 GST