Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01006 ATGATGCAGCAGCCAGGACCCGGCATGGCACCTCCCACCATGGGCcagcagccgcagcaacagtaccagcagcagcctccgccgcagcagcaacaaccctacgtcatgatgccgccgcagcatcaggcgccgcagcCTATGTGGGCCCCATCCGCCCAGCCTCCGCTGCCGCAGCAGCCTGCTAGCGCCGACGAGGTCCGAACCCTCTGGATCGGGGATCTGCAGTACTGGATGGACGAGAACTATCTCTACACCTGCTTTGCTCATACCGGCGAGGTTTCGTCAGTTAAAGTGATTCGGAACAAGCAAACTAGTCAATCTGAAGGTTATGGGTTTATTGAGTTTAATAGTCGTGCTGGAGCTGAGAGAATTCTCCAAACATATAATGGGGCTATTATGCCGAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAACTTTTAGTGCCGGTGAGAGGTCGCGTCAAGATGATTCTCCTGATTACACCATATTTGTTGGTGACTTGGCTGCAGATGTTACTGATTATCTTCTTCAGGAGACATTCAGGGCTCGTTACAACTCGGTGAAGGGTGCAAAAGTTGTCATTGATAGGCTAACTGGCCGTACCAAGGGGTATGGCTTTGTAAGGTTTTCAGAAGAGAGTGAGCAAATGAGAGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGAGGATTGGACCAGCCTCTAATAAAACCCCTGCCACTCAGTCCCAGCCAAAAGCTTCATATCTGAATTCTCAACctcaaggctcacagaatgagaatgatccaaataatacgactatttttgttggcaatttggatcctaatgtaaccgatgatcatctgaggcaagttttcagccagtatggagaattagttcatgtgaagattccagcaggcaagcgatgtgggtttgtccaatttgCAGACAGGAGCTGTGCTGAAGAGGCCCTTCGGGTGTTGAATGGGACGCTGTTGGGTGGACAAAATGTGCGTCTTTCATGGGGTCGCAGTCCTTCAAACAAACAGGCTCAGGCAGATCCAAACCAGTGGAATGGTGCTGCTGGTGCTGGTTCTGGTGGTGGATATTATGGGTATGCTGCTCAAGGATATGAAAATTATGGTTATGCTCCTGCTGGACAGGATCCCAACATGTATGGCAGTTATCCGGGATATCCTGGTTACCAAGCTCCTCAACAACAGCAGCAAATAGGATATAGTTGA 1236 0.3948 MMQQPGPGMAPPTMGQQPQQQYQQQPPPQQQQPYVMMPPQHQAPQPMWAPSAQPPLPQQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEVSSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTYNGAIMPNGGQSFRLNWATFSAGERSRQDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSEESEQMRAMTEMQGVLCSTRPMRIGPASNKTPATQSQPKASYLNSQPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQADPNQWNGAAGAGSGGGYYGYAAQGYENYGYAPAGQDPNMYGSYPGYPGYQAPQQQQQIGYS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01006 411 MobiDBLite consensus disorder prediction 235 272 - -
Gma15g01006 411 MobiDBLite consensus disorder prediction 232 272 - -
Gma15g01006 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 335 IPR000504 GO:0003723
Gma15g01006 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 226 IPR000504 GO:0003723
Gma15g01006 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 134 IPR000504 GO:0003723
Gma15g01006 411 Gene3D - 10 150 IPR012677 -
Gma15g01006 411 MobiDBLite consensus disorder prediction 31 57 - -
Gma15g01006 411 CDD RRM2_SECp43_like 160 239 - -
Gma15g01006 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 240 IPR000504 GO:0003723
Gma15g01006 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 147 IPR000504 GO:0003723
Gma15g01006 411 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 16 408 - -
Gma15g01006 411 MobiDBLite consensus disorder prediction 1 60 - -
Gma15g01006 411 MobiDBLite consensus disorder prediction 13 30 - -
Gma15g01006 411 Gene3D - 151 248 IPR012677 -
Gma15g01006 411 SMART rrm1_1 271 338 IPR000504 GO:0003723
Gma15g01006 411 SMART rrm1_1 68 143 IPR000504 GO:0003723
Gma15g01006 411 SMART rrm1_1 162 236 IPR000504 GO:0003723
Gma15g01006 411 MobiDBLite consensus disorder prediction 391 411 - -
Gma15g01006 411 CDD RRM1_SECp43_like 68 148 - -
Gma15g01006 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 342 IPR000504 GO:0003723
Gma15g01006 411 SUPERFAMILY RNA-binding domain, RBD 66 241 IPR035979 GO:0003676
Gma15g01006 411 Gene3D - 249 381 IPR012677 -
Gma15g01006 411 CDD RRM3_NGR1_NAM8_like 269 340 - -
Gma15g01006 411 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 16 408 - -
Gma15g01006 411 SUPERFAMILY RNA-binding domain, RBD 256 369 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01006 Gma-Chr15 8450117 8454140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01006 66 349 Eukaryotic Initiation Factors Gene Family AT2G23350 28.179 5.06e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01006 - - gmx:100794675 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01006 15 8450117 8454140 Gma13g01801 13 33345049 33349438 GST
Gma17g00131 17 1112489 1116813 Gma15g01006 15 8450117 8454140 PCT