Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00982 ATGGGTATCTCGTGGAGTGGCAACAGCAGAAGAAGAAACAATTACCTCCAAAACCGACCACCACCCCCTTCTTACTACTACCCTCCTGAATCCCACCCTCCTCCTCCGCCACCGCCACCACCACCACCGCAGTCTCAAGGCTACTTTCTCCCTTCAACAACCCCCTACGCCCCTCCCCCTCCCTTGCCTCCACCACCAGGTCCTCCCCAaAGCCACTCAATTTCGTTCTATTACAACTCCAACCCCAATTCCTACGGCACTCCCACTCTCGCCCCTCGATTTCACTACCAGCATTACTACCAGCCCCATCCCTCCGCGTGTCCCGCCCCTCGTCCCGCCTCCACCACTCCTCCGCCCTACGTCGACCACCAGACCGCCAAGAAGATAAGGAACTATGTCAATGTCCACAAAGACACCCTGCGCCTCGAGGTCGACGACCACAACCCCGATCACCATCTTCTTTCCTTCGTTTTCGATGCTGTCTACGATGGCAGCATTACTATCTTATACTTTGCCAAGGAAGAAGAAAAATGTAGGTTTGTTCCATTATATCCTGATGCATTTCAGCCGGTCAGAATCCCCTTTCAGAAAGGAGTTGGCCAGAAATTTGCTCAGCCTTCTGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCCGGAGAAGATGTCTTTCCTCTTGTAATATGTGCTGAAACAAGTTTGAAAACTACCTCAGAAGATGAAACTCCTGGTGATTCCTTGCTAGATGCATCCCCTCACATGCAAATAACTCAAGGTATCTTAGAGAAAAGTAATGGTGCTGGTCCATTCCTAATAAAAGTAGTTAAGCAGATTTTGTGGATTGATGGTGTTCGTTATGAGTTGAGAGAGTTATATGGAATAGGAAACTCATCCACAGATGATTTTGATGACAATGATCCTGGGAAGGAGTGTGTCATATGCATGACTGAACCAAAGGATACTGCTGTCTTACCTTGTCGACATATGTGTATGTGCAGTGAGTGTGCAAATGCTCTTCGACAACAATCCAATAAATGCCCTATATGCCGGCAGCCTATTGAGGAACTTATAGAGATCAAGGTGAACAATGGTGATCAATGA 1122 0.4804 MGISWSGNSRRRNNYLQNRPPPPSYYYPPESHPPPPPPPPPPPQSQGYFLPSTTPYAPPPPLPPPPGPPQSHSISFYYNSNPNSYGTPTLAPRFHYQHYYQPHPSACPAPRPASTTPPPYVDHQTAKKIRNYVNVHKDTLRLEVDDHNPDHHLLSFVFDAVYDGSITILYFAKEEEKCRFVPLYPDAFQPVRIPFQKGVGQKFAQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETSLKTTSEDETPGDSLLDASPHMQITQGILEKSNGAGPFLIKVVKQILWIDGVRYELRELYGIGNSSTDDFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECANALRQQSNKCPICRQPIEELIEIKVNNGDQ 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00982 373 MobiDBLite consensus disorder prediction 21 71 - -
Gma15g00982 373 ProSiteProfiles Zinc finger RING-type profile. 318 357 IPR001841 -
Gma15g00982 373 SMART ring_2 318 356 IPR001841 -
Gma15g00982 373 MobiDBLite consensus disorder prediction 1 20 - -
Gma15g00982 373 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 317 357 IPR045195 -
Gma15g00982 373 MobiDBLite consensus disorder prediction 1 79 - -
Gma15g00982 373 PANTHER MAHOGUNIN 1 372 IPR045194 GO:0061630
Gma15g00982 373 Pfam Zinc finger, C3HC4 type (RING finger) 316 362 - -
Gma15g00982 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 372 - -
Gma15g00982 373 SUPERFAMILY RING/U-box 317 363 - -
Gma15g00982 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 367 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00982 Gma-Chr15 8232697 8235982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00982 120 373 C3H Transcription Factor Family AT3G06140 62.745 9.76e-110 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00982 - - gmx:100786054 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00982 15 8232697 8235982 Gma15g00982 15 8232697 8235982 ECH