LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma15g00962	ATGGCTTCCACTGCTTTCAGAAACCTAAATTCTAAGCGCCTCAGCTCCTTTTCTCTTTGCATTTCACAAGTGCTAGCTGAAGAAAGTAAAGCCAAGGCGGCCTTTGAGGACATAGACAAGGCTCCTGAGGAGAAGAAGAGAGGAATTACTGTTGCGACTGCTCATGTAGAATATGAGACAGCAAAGAGGCACTATGCCCATGTTGATTGCCCAGGGCATGCAGACTATGTTAAGAACATGATAACTGGAGCTGAACAAATGGATGGTGGAATTCTTGTGGTTTCTGCTCCAGATGGGCCAATGCCTCAAACAAAGGAACACATACTGCTTGCTCGCCAGGCTAATAGCTCTTTTTGTCAATGTGTTGGTGTGCCATCATTGTTCTGCTTTCTAAATAAGGTTGATGCTGTTGATGATCCAGAGCTGCTTGAACTTGTAGAAATGGAGCTTCGCGAACTGCTTAATTTCTACAAATTTCCTGGGGATGAGATTCCAATTGTACGAGGTTCTGCCCTGTCTGCATCGCAGGGAACTAATGAAGAACTTGGAAAGAAGGCTATCTTAAAACTAATGGATGCTTTGGATGAATACATTTCGGATCCTGTGCGGCAACTTGATAAGCCTTTCTTAATGCCAGTAGATGATGTTTTCTCAATTCTGGTAAGCACAAAGATCATAACTGATGTATATCAAAACAATTCTTATCTTTGTGTAAAGAGTGGACCTTTGAAGACTACTGTAACTGGTGTGGAAATGTTCAAGAAAATTTTGGATCGAGGGGAAGCTGGTGATAATGTGGGACTTCTTCTACGTGGTCTGAAGCGCGATGATGTACAGCGAGGAATGGTCGTGACCAAGCCTGGTGCATTTAAAACATATAAGAAGTTCGAAGCAGAGATTTATGTCCTCTCAAAAGATGAAGGTGGCCGTCATACTGCTTTTTCCTCTAACTATAAGCCACAGTTTTACTTGAGGACTGCAGATGTTACCGGAAAGGTGGAATTACCAGAAAGTGTTAAGATGGTTATGCCTGGTGATAATGTGACTGCAACTTTTGAGCTGATATCACCTGTTCCTCTTGAAATAGGACAAAGATTTGCTTTGAGAGAGGGAGGCAGAACAGTAGGTGCAGGAGTTGTCTCCAAAGTGATGGCTTAG	1158	0.4283	MASTAFRNLNSKRLSSFSLCISQVLAEESKAKAAFEDIDKAPEEKKRGITVATAHVEYETAKRHYAHVDCPGHADYVKNMITGAEQMDGGILVVSAPDGPMPQTKEHILLARQANSSFCQCVGVPSLFCFLNKVDAVDDPELLELVEMELRELLNFYKFPGDEIPIVRGSALSASQGTNEELGKKAILKLMDALDEYISDPVRQLDKPFLMPVDDVFSILVSTKIITDVYQNNSYLCVKSGPLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKRDDVQRGMVVTKPGAFKTYKKFEAEIYVLSKDEGGRHTAFSSNYKPQFYLRTADVTGKVELPESVKMVMPGDNVTATFELISPVPLEIGQRFALREGGRTVGAGVVSKVMA	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma15g00962	385	Gene3D	Translation factors	329	384	-	-
	Gma15g00962	385	ProSitePatterns	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	39	54	IPR031157	-
	Gma15g00962	385	TIGRFAM	EF-Tu: translation elongation factor Tu	18	384	IPR004541	GO:0003746\|GO:0005525\|GO:0006414
	Gma15g00962	385	Gene3D	-	10	201	IPR027417	-
	Gma15g00962	385	PRINTS	GTP-binding elongation factor signature	66	76	IPR000795	GO:0003924\|GO:0005525
	Gma15g00962	385	PRINTS	GTP-binding elongation factor signature	46	54	IPR000795	GO:0003924\|GO:0005525
	Gma15g00962	385	PRINTS	GTP-binding elongation factor signature	82	93	IPR000795	GO:0003924\|GO:0005525
	Gma15g00962	385	PRINTS	GTP-binding elongation factor signature	127	136	IPR000795	GO:0003924\|GO:0005525
	Gma15g00962	385	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	36	217	IPR027417	-
	Gma15g00962	385	SUPERFAMILY	Translation proteins	201	290	IPR009000	-
	Gma15g00962	385	CDD	EFTU_III	291	380	-	-
	Gma15g00962	385	SUPERFAMILY	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	294	385	IPR009001	-
	Gma15g00962	385	PANTHER	ELONGATION FACTOR TU	18	384	-	-
	Gma15g00962	385	ProSiteProfiles	Translational (tr)-type guanine nucleotide-binding (G) domain profile.	1	202	IPR000795	GO:0003924\|GO:0005525
	Gma15g00962	385	Gene3D	Translation factors	204	325	-	-
	Gma15g00962	385	PANTHER	ELONGATION FACTOR TU-RELATED	18	384	-	-
	Gma15g00962	385	Pfam	Elongation factor Tu GTP binding domain	30	198	IPR000795	GO:0003924\|GO:0005525
	Gma15g00962	385	Pfam	Elongation factor Tu C-terminal domain	291	383	IPR004160	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma15g00962	Gma-Chr15	8065037	8069124	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma15g00962	38	383	Eukaryotic Initiation Factors Gene Family	AT5G60390	26.772	5.55e-28	112

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma15g00962	K02358		-	gmx:102662879	652.899

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma15g00962	15	8065037	8069124	Gma13g01850	13	33805406	33809297	GST