Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00937 ATGGAACCCCAATCTCTCCCTCCTCCTCCCACCATGGACGACGCCCAAGACCCTTCCTCAATTTGGGACTTCTCTTACCTCCTCGACTTCAACCTCGACGACCAAGATGGTATTTTTACTAGCAGTAACTCTCTCCCTCTTCCCTTAAACGACGACGACGACGCCGCCGCTCCCGAGATTTCTCAAAACGACAGGGTCCGAAAGCGCGACCCGAGGATGACATGCTCCAACTTCCTCGCGGGTCGGGTCCCCTGCGCCTGCCCCGAACTCGACGCGAAACTCGAGGACGAGGGTTTGCCCGTCAAGAAACGCGCCCGCACCGCGCGTGCATCTGCGTCCGCACGCTGCCAGGTCCCTGGCTGCGAAGCCGATATCTCAGAGCTCAAGGGGTATCACCGCCGACACAGGGTTTGCTTGCGCTGCGCTAATGCCGCCACCGTTATGCTCAACGACGAGGCCAAGAGATACTGCCAACAGTGTGGAAAGTTTCACGTTTTGTCGGATTTCGACGAAGGTAAACGGAGCTGCAGAAGGAAGTTGGAGCGGCATAATACCAGAAGGAGAAGAAAGCCTCCGGCGGATTCTGGAGGTGCTGCTCATAGTGAACTACTTCAACCTGTTGCTCAAAATGAGGAACACAATTATCATGTGGAAGCTGGAAAAGATTGTTCAAATTTGAGTACCGATGTCAATGACGTAGGAGTGTctccagatcatgaagatgaaccggtctccattcccagcttggctccagatcatgaagatgaaccggtctccattcccagcttggctccCGAAGCACAGAATATTAATAGTGACAGTGTTGTGTCTTTGGCTGTTTCTGGTGAAATGCGGGTGAATAGTGGGAACACTTCTAATTCACCTTCGTATTGCAACAATAAGAATGCCTATTCGTCTGTGTGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCAGAATTTCCTAGAAGGCTACGACACCAAATATTCCAATGGTTGGCAAATATGCCTGTAGAATTGGAAGGATATATCCGCCCTGGGTGTACGATCCTGACAGTTTTTATTGCAATGCCTAACATTATGTGGATAACTTTATTGAAAGACTCTTTGGAGTATGTGCACGATTTTGTTGCTCCTGGAAAGATGCTGTCTGGAAGAGGCACCGCATTAGTTCATCTGAATGACATGATCTTCCGTGTTATGAAAGATGGAACTTCTGTGACAAAAGTTGAAGTTAACATGCTGGCACCGAGGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTACTGCAGCCTAAGTTTCGGCTTCTTGTATCATTTTCTGGAAAGTATCTGAAATGTGAGTATTGTGTGCCATCTCCACATAGCTGGACTGAAGACAATATTTCGTGTGCTTTTGACAATCAGTTATACAAGATATATGTTCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAATCTGGTTTATCAAACTTCATTCCTGTACTCATTGGGGACAAAGAAATTTGTACTGAAATGAAGACACTGCAGCAAAAATTAGATGTTTCTCTCCTTTCTAAACAATTCCAGTCTGCATCTGGTGGTTCTATCTGCAGCTCATGTGAAACTTTTGCACTTAGTCACACATCATCATCAGACTTCCTTGTAGATATAGCATGGTTGCTTAAGGACACCACTTCAGAAAATTTTGACAGAGTGATGACAGCTTCACAAATTCAAAGATATTGCCATTTGTTGGATTTTCTGATATGCAATGATTCAACAATTATTTTGGGAAAAATATTACCAAATTTGATAATCTTGACAGAGAGCGTGGAATCCAACAATGTTGTAATTAATAGGACAAGTGATGTTGACATAACGCAACTCCTGAATCACATACATAATGCTAGTAATGTCATATGTCAGAAACATCAGCAAAGTAGAAGTATAATTGTGCACTCTGAAATGGAAGGCTTTAAACTTGCTCAGGGCTGCTCCCAAGATAACATGCTATCAGTTGCAATTAACAGCCAGGGTATCCTGTCGAGAACAGATGAGAAGTGGGGAGTACTGAAAAGTCCAACTTCTAATGACAAAACGGAAAGAATACCACTTTTGAAGAGGGATATTATAATGAGCGTGGAAGAGTTGCCTGAAAGATATGGGCGTCGATGTTTGGGCAGGGGATTCTTGACCTCTCGACCAGCTATTTTTGTGATTGTTTCGGTTGCTGTTTGTCTTGGGGTATGTGTTGCCGTCCTTCATCCTGGTAGGGTTAGTGAGTTAGCAGTATCGGTTAGAAGGTGCTTGTTTAACTATTAG 2376 0.4289 MEPQSLPPPPTMDDAQDPSSIWDFSYLLDFNLDDQDGIFTSSNSLPLPLNDDDDAAAPEISQNDRVRKRDPRMTCSNFLAGRVPCACPELDAKLEDEGLPVKKRARTARASASARCQVPGCEADISELKGYHRRHRVCLRCANAATVMLNDEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPPADSGGAAHSELLQPVAQNEEHNYHVEAGKDCSNLSTDVNDVGVSPDHEDEPVSIPSLAPDHEDEPVSIPSLAPEAQNINSDSVVSLAVSGEMRVNSGNTSNSPSYCNNKNAYSSVCQTGRISFKLYDWNPAEFPRRLRHQIFQWLANMPVELEGYIRPGCTILTVFIAMPNIMWITLLKDSLEYVHDFVAPGKMLSGRGTALVHLNDMIFRVMKDGTSVTKVEVNMLAPRLHYVHPTYFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYLKCEYCVPSPHSWTEDNISCAFDNQLYKIYVPHTEESLFGPAFIEVENESGLSNFIPVLIGDKEICTEMKTLQQKLDVSLLSKQFQSASGGSICSSCETFALSHTSSSDFLVDIAWLLKDTTSENFDRVMTASQIQRYCHLLDFLICNDSTIILGKILPNLIILTESVESNNVVINRTSDVDITQLLNHIHNASNVICQKHQQSRSIIVHSEMEGFKLAQGCSQDNMLSVAINSQGILSRTDEKWGVLKSPTSNDKTERIPLLKRDIIMSVEELPERYGRRCLGRGFLTSRPAIFVIVSVAVCLGVCVAVLHPGRVSELAVSVRRCLFNY 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00937 791 ProSiteProfiles Zinc finger SBP-type profile. 113 190 IPR004333 GO:0003677
Gma15g00937 791 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 789 IPR044817 GO:0003677
Gma15g00937 791 MobiDBLite consensus disorder prediction 43 68 - -
Gma15g00937 791 Pfam SBP domain 116 190 IPR004333 GO:0003677
Gma15g00937 791 SUPERFAMILY SBT domain 114 192 IPR036893 GO:0003677|GO:0005634
Gma15g00937 791 MobiDBLite consensus disorder prediction 226 257 - -
Gma15g00937 791 MobiDBLite consensus disorder prediction 234 249 - -
Gma15g00937 791 MobiDBLite consensus disorder prediction 180 199 - -
Gma15g00937 791 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 16 789 - -
Gma15g00937 791 Gene3D - 111 177 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00937 Gma-Chr15 7810614 7818580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00937 6 785 SBP-box Gene Family AT5G18830 47.109 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma15g00937 SBP 6.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00937 - - gmx:100819905 1572.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00937 15 7810614 7818580 Gma15g00937 15 7810614 7818580 ECH
Gma15g00937 15 7810614 7818580 Gma13g01876 13 34069677 34077241 GST