Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00934 ATGCAAGCACCTCAAGCTGCATCAGCCACTGATGAAGCTCCTGAGATTTCCCATCAGGCTGTCCCCCAGCGAAACAAAGAAGTTTCAGACAGTGGACCCGGTGGTAGGCGCCCTGATATTTCACTTCAAGTTCCCCCTAGACCTATAGGGTTTGGTAGCACTAGTAGTGGAAGGGTTCTGGACCATTGTCAAAGTTTCGGTAAAGGGATTTCATCATCAAGAGGCTTCTTGCGGGCCTTGAGCTTGAAAAGAAAAGGAAATGTAGCAGATGGCGAAAGAAGTTCCCTCCTTAATTCAGACCCCAAGACAGCTGCAGACGGACCTAATATGGCCTCCATATCTGAAATTGCATGGAAAAGATGTACTTCTCTTCCTGTTACACCTGCATCAAATCTGTCTCCTTCAGTTTCTACACCCATTTCTGCAAGGACATATAATGAACAGACTAAGCCTCATAAAGATGTTGACCGTTCTAAGGTTTCAAGGTCCCTTTCTGTACCTGGGCGAAATGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGTAGCGAACAGGAGCAACAAGATTCAAATGATGATCAAATAACTCCTGTGCAAGTAGAAGTTACTGCCGATGAAGAAATCCCCGAAGAGGAAGCGGTGTGCAGGATATGTTTTGATGTATGTGATGAAAGGAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATTAAATGGTTTAGCACAAAAGGAGATAAGGAATGTGATGTATGCAGGCAAGAGGTTCAGAATTTGCCTGTAACTTTGCTTCGTGTGACTAGCTCTGTTAGACAAAACAGACAGCTGCAAGGTCAGCATAACCTACATCCAGAGTCAATAAGCGCTTGGCAAGACTTTGTGGTGCTTGTCCTGATCAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTACTGCTTCCTGAATTAAAGACTCAAGCAATTATTATAGCAGCACCATTTGCCTTTACCTTGGGCCTCCTAGCTTCTATTTTTGCAGTCATCCTGGCAATTAAAGAGTATATATGGACATATGCTGCTCTTGAGTTTGCACTTGTGGCTTTAACTGTGCATCTATTTTATACTATGttgcatttgacagccatatatgccatactactttcatcagttttgggttttggaattgctatgggcatcaactacgcatatattcagtttgtcacttggagacttcaggtttctcatgatgataacccagtatga 1269 0.3838 MQAPQAASATDEAPEISHQAVPQRNKEVSDSGPGGRRPDISLQVPPRPIGFGSTSSGRVLDHCQSFGKGISSSRGFLRALSLKRKGNVADGERSSLLNSDPKTAADGPNMASISEIAWKRCTSLPVTPASNLSPSVSTPISARTYNEQTKPHKDVDRSKVSRSLSVPGRNVVIVRSVSFSTRSEQEQQDSNDDQITPVQVEVTADEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLRLVHEECLIKWFSTKGDKECDVCRQEVQNLPVTLLRVTSSVRQNRQLQGQHNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVALTVHLFYTMLHLTAIYAILLSSVLGFGIAMGINYAYIQFVTWRLQVSHDDNPV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00934 422 MobiDBLite consensus disorder prediction 1 57 - -
Gma15g00934 422 ProSiteProfiles Zinc finger RING-type profile. 215 262 IPR001841 -
Gma15g00934 422 PANTHER ZINC FINGER PROTEIN 3 422 - -
Gma15g00934 422 MobiDBLite consensus disorder prediction 87 108 - -
Gma15g00934 422 Pfam RING-variant domain 215 261 IPR011016 GO:0008270
Gma15g00934 422 ProSiteProfiles Zinc finger RING-CH-type profile. 207 268 IPR011016 GO:0008270
Gma15g00934 422 CDD RING_CH-C4HC3_MARCH 215 262 - -
Gma15g00934 422 MobiDBLite consensus disorder prediction 128 163 - -
Gma15g00934 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 270 IPR013083 -
Gma15g00934 422 MobiDBLite consensus disorder prediction 128 146 - -
Gma15g00934 422 SUPERFAMILY RING/U-box 211 265 - -
Gma15g00934 422 PANTHER OS02G0165000 PROTEIN 3 422 - -
Gma15g00934 422 SMART ringv_2 214 262 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00934 Gma-Chr15 7786853 7792715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00934 153 321 C3H Transcription Factor Family AT2G37950 26.776 3.57e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00934 - - gmx:100527094 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00934 15 7786853 7792715 Gma15g00934 15 7786853 7792715 ECH