Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00927 ATGTGCCTAATCAGAAGCATGAGATCGCAGTCGCAGCGTGTGGTGCAGGAACAAGAAGAAGCAGAGTGTGTCGGCGACAGCATGCGACAGAGTTGTTGGGCCAACATGCCCCAAGAGCTTCTCCGAGAGGTCCTCTTCAGAATCGAGGCCTCCGAGGACGCGTGGCCGCCGCGGAAGAGCGTTGTCGCCTGCGCCGGCGTTTGCCGCAGCTGGAGACAAATCACCATAGACATTGTCAAAACACCCGAACTCTCCTCCAAGATCACCTTCCCCATTTCTGTTAAACAGCCTGGCCCAAGGGAGAATCTCCTACGATGCTTTATAAAGCGCAACCGTTCCAGCCAAACATACTATTTGTATCTCAGTTTAACCAATACACTAGCTGAAGATGGGAAGTTCCTTCTTGCTGCACGCAAATGCAGACGTCCAACCTGCACAGATTATATCATCTCTCTTGATGCAGATGATATGTCAAAGGGAAGCAACTCCTATGTTGGGAAACTAAGATCAAATTTTCTTGGAACAAAGTTCACAATCTATGATGGCCAGCCACCTCATGCAGGAGCAAAGATTATGAAAAGTCGCTCCACAAGGCTGGTGAATCTAAAGCAAGTTTCACCCAAGGTCCCTACAGGAAACTATCCAGTGGCCCATATTTCATATGAATTGAATGTGCTTGGCTCAAGGGGGCCTAGGAGAATGCATTGTGTCATGGATTCCATTCCTGCCGCTGCAATTGAACCTGGAGGTGTAGCTCCTGTACAGACTGAGTTTTCTCTTAACAACATAGACATGTTTCCTTCATTCCCCTTTTTTCGATCAAAATCAAATCGTGTGGAAAATTCCGTGTCTGGACCATTGGTTGATCAAAAGGATGGGATGCTAGTGTTGAAAAACAAGGCCCCTAGGTGGCATGAGCAGCTGCAATGTTGGTGCCTGAACTTTCATGGACGGGTGACAATTGCCTCAGTTAAAAACTTTCAGCTGGTGGCTTCTGCAGAAAACAGACCTGCTGGACCAGAACATGATAAGATCATCCTCCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGGTTCCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGTTTTGATACCAAGATTGCTTGTGAATGA 1158 0.4706 MCLIRSMRSQSQRVVQEQEEAECVGDSMRQSCWANMPQELLREVLFRIEASEDAWPPRKSVVACAGVCRSWRQITIDIVKTPELSSKITFPISVKQPGPRENLLRCFIKRNRSSQTYYLYLSLTNTLAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDGQPPHAGAKIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPAAAIEPGGVAPVQTEFSLNNIDMFPSFPFFRSKSNRVENSVSGPLVDQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENRPAGPEHDKIILQFGKVGKDLFTMDYRFPISAFQAFAICLSSFDTKIACE 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00927 385 SUPERFAMILY F-box domain 28 77 IPR036047 GO:0005515
Gma15g00927 385 PRINTS Tubby superfamily signature 148 164 IPR000007 -
Gma15g00927 385 PRINTS Tubby superfamily signature 164 188 IPR000007 -
Gma15g00927 385 PRINTS Tubby superfamily signature 213 240 IPR000007 -
Gma15g00927 385 PRINTS Tubby superfamily signature 297 314 IPR000007 -
Gma15g00927 385 PRINTS Tubby superfamily signature 315 331 IPR000007 -
Gma15g00927 385 PRINTS Tubby superfamily signature 342 361 IPR000007 -
Gma15g00927 385 PRINTS Tubby superfamily signature 363 385 IPR000007 -
Gma15g00927 385 ProSitePatterns Tub family signature 1. 315 328 IPR018066 -
Gma15g00927 385 Gene3D - 26 88 - -
Gma15g00927 385 Gene3D Tubby Protein; Chain A 90 385 IPR025659 -
Gma15g00927 385 Pfam Tub family 94 380 IPR000007 -
Gma15g00927 385 Pfam F-box domain 33 79 IPR001810 GO:0005515
Gma15g00927 385 SUPERFAMILY Tubby C-terminal domain-like 82 385 IPR025659 -
Gma15g00927 385 PANTHER TUBBY-RELATED 4 385 - -
Gma15g00927 385 ProSitePatterns Tub family signature 2. 370 385 IPR018066 -
Gma15g00927 385 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 4 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00927 Gma-Chr15 7708576 7713579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00927 8 385 TUB Transcription Factor Family AT2G47900 71.654 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gma15g00927 Tub 1.1e-112 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00927 K19600 - gmx:100815464 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00927 15 7708576 7713579 Gma15g00927 15 7708576 7713579 ECH
Gma15g00927 15 7708576 7713579 Gma13g01886 13 34222453 34227577 GST
Gma17g00204 17 1684913 1687232 Gma15g00927 15 7708576 7713579 PCT
Gma15g00927 15 7708576 7713579 Gma17g00204 17 1684913 1687232 PCT