Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00925 ATGGGGTGTGCGTTTGGAAGAGAGGCTTCGAGGGAGGAGAGGAGAGAGGAAGTGAGAGAGGCAAAAGCTGAGGAGGAGGGTAGAGGAGAGGTTGTTGAGAATGAGAACATTGAGAAGGAGGGTGGAAGAGAGGAGAGGAGGACAAGGGCAAGGGGAGAGAGGAGGCGATCTTCGAAGCCGAATCCGAGGTTGAGCAATCCTCCTAACCATGTTCATGGTGAGCAGGTTGCAGCAGGGTGGCCCTCTTGGCTCTCTAAGGTTGCTGGTGAGGCTATCAATGGATTGACCCCTCGGAGGGCCGACACTTTTGAGAAGATTGATAAGattgggcaaggtacatacagcaatgtttacaaagctagggatactttaacggggaaaattgttgctctaaagaaggtccgttttgacaatttagagcctgagagtgtcaagttcatggccagagagattttgattctccggcgtttggatcatcccaatgtcatcaaactggaaggcttagtgacttctagaatgtcatgcagtttatatcttgtgtttgaatacatggtgcatgatttggctggacttgccacaaacccagcaatcaagttcacagagtctcaggtaaaatgttacatgcatcagttattttctggactggaacattgtcacaaccgtcatgtgctgcatcgtgatataaaggggtcgaaccttcttattgacaatgatggaattctcaagattggtgattttggattagcttccttctttgatcctaatcacaagcaccctatgaccagtagagtggttactttatggtatcgacctccagaacttcttcttggggccactgaatatagtgtaggagtggatctctggagtgctggctgcattcttgctgaattgttggctggaaagcctattatgcctggtcgaacagaggtggagcagctacacaagatattcaaactatgtggttctccttctgatgaatattggaaaaagtcaaagttgcctcatgctaccatttttaagccccaacaatcatacaagcgatgcattgcagagacatataaagattttcctccatcATCTCTGCCACTTATGGATACCCTTCTCGCAATCAATCCAGATGAACGTTTGACTGCCACTGCTGCATTGCATAGTGAAttcttcacaacaaaaccatatgcttgtgagccctctagccttccaaaatatcctcccagcaaggagatggatgcaaaGCTACGGGATGAAGAAGCTAGGAGATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAATCTCGTCCACGTGAGCGAGTTGGGAGGGGAATTGCAGTTCCAGAGGCCAATGCCGAACTGCAAGCAAATATTGATAGACGACGGCTGATCACACATTCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCCCACCAAGATGGAGCTCTAGGCTATCCTTTGGGTTCTTCACATCACATGGATCCAGTTTTTGATCCCCCTGATGTTCCATTTAGTTCTACAAACTTCTCACAACCTAAAGCAAATATCCAAACCTGGTCCGGCCCATTGGTAGATCCTTCTGGTGTGGGCGTGCCGAGGAGAAAGAAGAAACATGGCAAGTGA 1626 0.246 MGCAFGREASREERREEVREAKAEEEGRGEVVENENIEKEGGREERRTRARGERRRSSKPNPRLSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLTPRRADTFEKIDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMVHDLAGLATNPAIKFTESQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGILKIGDFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATEYSVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKSKLPHATIFKPQQSYKRCIAETYKDFPPSSLPLMDTLLAINPDERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGKANADGVKKSRPRERVGRGIAVPEANAELQANIDRRRLITHSNAKSKSEKFPPPHQDGALGYPLGSSHHMDPVFDPPDVPFSSTNFSQPKANIQTWSGPLVDPSGVGVPRRKKKHGK 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00925 541 Gene3D Transferase(Phosphotransferase) domain 1 186 426 - -
Gma15g00925 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Gma15g00925 541 Gene3D Phosphorylase Kinase; domain 1 91 185 - -
Gma15g00925 541 SMART serkin_6 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma15g00925 541 Pfam Protein kinase domain 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma15g00925 541 ProSiteProfiles Protein kinase domain profile. 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma15g00925 541 SUPERFAMILY Protein kinase-like (PK-like) 98 392 IPR011009 -
Gma15g00925 541 PANTHER CELL DIVISION PROTEIN KINASE 1 541 - -
Gma15g00925 541 MobiDBLite consensus disorder prediction 504 523 - -
Gma15g00925 541 MobiDBLite consensus disorder prediction 1 74 - -
Gma15g00925 541 MobiDBLite consensus disorder prediction 7 60 - -
Gma15g00925 541 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Gma15g00925 541 MobiDBLite consensus disorder prediction 467 541 - -
Gma15g00925 541 CDD STKc_CDK9_like 103 387 - -
Gma15g00925 541 PANTHER CYCLIN-DEPENDENT KINASE 1 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00925 Gma-Chr15 7687500 7691792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00925 98 425 Core Cell Cycle Gene Families AT5G10270 49.709 1.98e-112 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gma15g00925 Pkinase 1.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00925 K08819 - gmx:100814934 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00925 15 7687500 7691792 Gma15g00925 15 7687500 7691792 ECH
Gma15g00925 15 7687500 7691792 Gma13g01888 13 34242191 34247028 GST
Gma17g00205 17 1688063 1692170 Gma15g00925 15 7687500 7691792 PCT
Gma15g00925 15 7687500 7691792 Gma17g00205 17 1688063 1692170 PCT