Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00917 ATGGAAGGTTCTATCCTTGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAGCATTATAGAAGAAGATGCAGGATTAGAGCACCATGTTGCAATGAGCTCTACTTTTGCCGCCATTGTCATAACGAGGCAACGAGCATGCTGAGCAACCCTTTTGATCGGCACGAACTCATTCGCCAGGACGTTCAACATGTTGTTTGTACAGTTTGTGACACAGAGCAGCCAGTTGCTCAAGTTTGCACAAACTGTGGTGTCAGAATGGGAGAATATTTCTGCAGCATCTGCAAATTCTTCGATGATGATACCGGGAAACAACAGTTTCATTGTGATGATTGTGGGATTTGTAGAATTGGTGGTCGAGAGAATTATTTCCACTGCAATAAGTGTGGGTCTTGCTATTCAACTAGTCTGCGTGATAATCATATGTGTGTGGAGAATTCCATGAGGCATCATTGCCCCATTTGTTATGAGTACCTTTTTGACTCATTGAAAGACACTGCTGTTATGAAATGTGGTCACACAATGCATAGTGAATGTTACCTAGAGATGCTAAAGCGTGACAAGTATTGTTGTCCCATATGCTCAAAGTCGGTGATGGACATGTCTAGGGCATGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGATGATTATCGGTACAGAAAGGTTTGGATACTCTGTAATGACTGTAATGACACAACTGAAGTTTACTTCCATGTTCTTGGGCAAAAATGTGGTCACTGCAGTTCATATAATACTCGCGCTATAGCTCCCCCTGTTCTTCCTCAATGA 804 0.4254 MEGSILERLDFGKMGYGCKHYRRRCRIRAPCCNELYFCRHCHNEATSMLSNPFDRHELIRQDVQHVVCTVCDTEQPVAQVCTNCGVRMGEYFCSICKFFDDDTGKQQFHCDDCGICRIGGRENYFHCNKCGSCYSTSLRDNHMCVENSMRHHCPICYEYLFDSLKDTAVMKCGHTMHSECYLEMLKRDKYCCPICSKSVMDMSRAWKRIDEEIEATVMPDDYRYRKVWILCNDCNDTTEVYFHVLGQKCGHCSSYNTRAIAPPVLPQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00917 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Gma15g00917 267 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
Gma15g00917 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Gma15g00917 267 SMART ring_2 153 195 IPR001841 -
Gma15g00917 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 226 IPR013083 -
Gma15g00917 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Gma15g00917 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Gma15g00917 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 1 267 - -
Gma15g00917 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Gma15g00917 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 267 - -
Gma15g00917 267 Pfam Zinc finger, C3HC4 type (RING finger) 153 195 IPR018957 GO:0046872
Gma15g00917 267 SUPERFAMILY RING/U-box 152 202 - -
Gma15g00917 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Gma15g00917 267 Gene3D - 227 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00917 Gma-Chr15 7635482 7639263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00917 10 266 C2H2 Transcription Factor Family AT3G18290 39.695 1.15e-54 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00917 K10144 - gmx:100812246 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00917 15 7635482 7639263 Gma15g00917 15 7635482 7639263 ECH
Gma15g00917 15 7635482 7639263 Gma13g01895 13 34279033 34282580 GST
Gma17g00211 17 1727719 1731155 Gma15g00917 15 7635482 7639263 PCT
Gma15g00917 15 7635482 7639263 Gma17g00211 17 1727719 1731155 PCT