Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00902 ATGGAGCAGTACGGCCGGTCCAGTGAAGGTTCGCGGTCTGATCCGTCGCCGGAATGGGCCGGGCCCGAAGCCCAAACCGGGCTCGAAGAGCCCATGTGGCAATTGGGAATGGGTGGTGCTGGGGAGGAATCGTATCCGCAACGCCCCGATGAGGTTGATTGCACTTACTATTTGAGGACTGGCTTCTGTGGCTTCGGTTCCCGCTGTCGGTTCAACCATCCTCGTGATCGTGCCGCGGTTGCTGGAGCTGAGAGGACCACAGGGGAGTATCCGGAACGAGTAGGCCAGCCTGTGTGCCAGTATTACATGAGGACAAGAACATGCAAATTTGGTTCGTCTTGCAAGTACCACCACCCCAGGCAGGCAGGAGGCACTGCTGCTACTCCCATGTCACTAAGTTATTATGGATATCCATTGCGACCGGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCGTCCAAATTCCAGCACCATCGCCAGTTGCCCCATCGCCTTTGCCTGTACCGGTACCTTCGCCGTTATATTCAACCATGCAGCCCCCACCTGGTCCTTCGTCCCAGCAAATTGGGGTGCTGGTTGCAAGGCCTCCTATGTTGCCTGGCTCATTAGTCCAGAGCCCCTATGGACCTGTGGTACTGTCACCTGCCATGGTACCTATTTCTGGCTGGGGTCCTTATCAAGCTTCTGCGACAGGTGCTGTTCATCCTTCTGGTACTCCATCTAATGTTGGTTCACCACAGCTTTATGGGATAACCCAACTACCTTCACCAGTAGCTGCCTATCCTGGACCTTATCAACCTTCTGGTTCCCCAGTTGGTCCTTCAAGCAGTAGTCAGAAGGAGCAGGCATTTCCAGAAAGGTCTAACCAACCAGAATATCAGTATTATCCGAAAACAGGGGAGGTTAAATTTGGTCCATCATATAGGTATAACCCTCCACCGGACATGAGTGCACCAAAAGCAAATGTGATTCTTAGTCCTGCAGGTCTTCCTTTGCGCCCGGGGGCGGCACCAGCTTGCATTCATTATGCACAACATGGAGTGTGTAAGTTTGGTTCTGCATGCAAATTCGATCATCATATGGGATCACTGAGTTATAGTCCATCTGCTTCTTCCCTGGCTGACATGCCAGTTGCACCCTATCCTGTGGGTTCAACAATTTCTACTCTTGCTCCATCATCTTCATCTTCAGAGTTGCGGCCTGAACTTACCTCAGGATCTAGCAAGGAGTCTGTTCCATCCAGAATGTCTTCATCAACATTGACTGGGTCAATTGGCTTGACTTTGTCAACTGGTGGGCCCATTTCTCAATCAAGCACTCAACCACCTTCCCAAAGTTCAGACTTTCGTTTGTCATGTGTTTATGACTCTTCACCTGAACCCTTTTTTAATTTGGGAACAATTTTCCATTTCTGCTCTCTCCTGGCGCACAACACAACTTCCATTGAAAGAAACTTTCCGATCAAGTCCTTATGTGCACCATGTGTAATGCATTGGACCAACAAAAACGATATCATGTAG 1575 0.499 MEQYGRSSEGSRSDPSPEWAGPEAQTGLEEPMWQLGMGGAGEESYPQRPDEVDCTYYLRTGFCGFGSRCRFNHPRDRAAVAGAERTTGEYPERVGQPVCQYYMRTRTCKFGSSCKYHHPRQAGGTAATPMSLSYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPVPAGVQIPAPSPVAPSPLPVPVPSPLYSTMQPPPGPSSQQIGVLVARPPMLPGSLVQSPYGPVVLSPAMVPISGWGPYQASATGAVHPSGTPSNVGSPQLYGITQLPSPVAAYPGPYQPSGSPVGPSSSSQKEQAFPERSNQPEYQYYPKTGEVKFGPSYRYNPPPDMSAPKANVILSPAGLPLRPGAAPACIHYAQHGVCKFGSACKFDHHMGSLSYSPSASSLADMPVAPYPVGSTISTLAPSSSSSELRPELTSGSSKESVPSRMSSSTLTGSIGLTLSTGGPISQSSTQPPSQSSDFRLSCVYDSSPEPFFNLGTIFHFCSLLAHNTTSIERNFPIKSLCAPCVMHWTNKNDIM 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00902 524 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Gma15g00902 524 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Gma15g00902 524 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Gma15g00902 524 SMART c3hfinal6 352 379 IPR000571 GO:0046872
Gma15g00902 524 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Gma15g00902 524 MobiDBLite consensus disorder prediction 288 313 - -
Gma15g00902 524 ProSiteProfiles Zinc finger C3H1-type profile. 352 380 IPR000571 GO:0046872
Gma15g00902 524 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Gma15g00902 524 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Gma15g00902 524 Gene3D - 129 173 - -
Gma15g00902 524 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Gma15g00902 524 Gene3D - 46 128 - -
Gma15g00902 524 SUPERFAMILY CCCH zinc finger 357 382 IPR036855 GO:0046872
Gma15g00902 524 MobiDBLite consensus disorder prediction 1 46 - -
Gma15g00902 524 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Gma15g00902 524 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 166 IPR000571 GO:0046872
Gma15g00902 524 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Gma15g00902 524 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 356 378 IPR000571 GO:0046872
Gma15g00902 524 MobiDBLite consensus disorder prediction 408 441 - -
Gma15g00902 524 SUPERFAMILY CCCH zinc finger 142 167 IPR036855 GO:0046872
Gma15g00902 524 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 466 - -
Gma15g00902 524 MobiDBLite consensus disorder prediction 278 315 - -
Gma15g00902 524 SUPERFAMILY CCCH zinc finger 50 77 IPR036855 GO:0046872
Gma15g00902 524 PANTHER PROTEIN PHOSPHATASE RELATED 1 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00902 Gma-Chr15 7526642 7534757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00902 1 430 C2H2 Transcription Factor Family AT5G18550 57.143 2.45e-142 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma15g00902 zf-CCCH 3.5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00902 - - gmx:100812433 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00902 15 7526642 7534757 Gma15g00902 15 7526642 7534757 ECH
Gma15g00902 15 7526642 7534757 Gma13g01907 13 34382559 34391933 GST
Gma17g00221 17 1805391 1809748 Gma15g00902 15 7526642 7534757 PCT
Gma15g00902 15 7526642 7534757 Gma17g00221 17 1805391 1809748 PCT