Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00825 ATGTCTGTGGTGGCCGATAATTCAGCAAACAATGGAAGCCACCAGGTGGTTTTAAATGTAAACGGTGATGCCTCCAAAAAGTGTGATGACTCATCTAACCAAGACTGTGTGCCACTTCTGCAGAAGTTGGTAGCAGAGGTGGTGGGGACGTACTTCTTGATATTTGCAGGGTGTGCTTCAGTGGTGGTGAACCTTGACAAGGACAAAGTGGTCACACAACCTGGGATTTCAATTGTTTGGGGCCTCACTGTTATGGTTTTGGTTTACTCTGTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCTGTCACTATTGCTCATGCTACCACCAAAAGGTTTCCACTGAAGCAGGTACCCGCCTATGTGATAGCTCAGGTCGTTGGAGCCACACTTGCTAGTGGAACTCTCAGACTTATATTCAATGGCAAGAGTGACCACTTTACAGGAACACTCCCTGGCGGTTCTGACTTGCAATCTTTTGTGGTCGAATTCATAATCACTTTTTATCTCATGTTCGTCATTTCTGGCGTTGCCACCGATAACAGAGCGATTGGAGAGTTGGCAGGGCTTGCAGTTGGGTCTACGGTACTGCTGAATGTGATGTTTGCCGGGCCAATCACAGGGGCATCAATGAATCCAGCAAGAAGCTTAGGGCCTGCTATTGTGCACAATGAGTACAAAGGAATATGGATATATTTGGTGTCACCAACTCTTGGAGCTGTGGCTGGTACTTGGGCCTATAATTTCATCAGGTACACAAATAAGCCAGTGCGTGAAATCACCAAGAGTGCCTCTTTCCTCAAAGGTGGTGAAGCTGAGTGA 822 0.4696 MSVVADNSANNGSHQVVLNVNGDASKKCDDSSNQDCVPLLQKLVAEVVGTYFLIFAGCASVVVNLDKDKVVTQPGISIVWGLTVMVLVYSVGHISGAHFNPAVTIAHATTKRFPLKQVPAYVIAQVVGATLASGTLRLIFNGKSDHFTGTLPGGSDLQSFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHNEYKGIWIYLVSPTLGAVAGTWAYNFIRYTNKPVREITKSASFLKGGEAE 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00825 273 Pfam Major intrinsic protein 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma15g00825 273 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma15g00825 273 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma15g00825 273 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma15g00825 273 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma15g00825 273 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma15g00825 273 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma15g00825 273 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 5 269 - -
Gma15g00825 273 TIGRFAM MIP: MIP family channel proteins 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma15g00825 273 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Gma15g00825 273 CDD MIP 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma15g00825 273 PANTHER AQUAPORIN NIP2-1 5 269 IPR034294 -
Gma15g00825 273 SUPERFAMILY Aquaporin-like 37 261 IPR023271 -
Gma15g00825 273 Gene3D Glycerol uptake facilitator protein. 3 263 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00825 Gma-Chr15 6787700 6790142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00825 28 268 Major Intrinsic Protein MIP AT5G37820 60.000 2.79e-103 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00825 K09874 - gmx:100786924 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00825 15 6787700 6790142 Gma15g00825 15 6787700 6790142 ECH
Gma05g01619 05 37959722 37962156 Gma15g00825 15 6787700 6790142 PCT
Gma08g01106 08 9388473 9391022 Gma15g00825 15 6787700 6790142 PCT
Gma15g00825 15 6787700 6790142 Gma05g01619 05 37959722 37962156 PCT
Gma15g00825 15 6787700 6790142 Gma08g01106 08 9388473 9391022 PCT