Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00727 ATGTCTATCCCCGATTCTCCTTTCGCCGAAGATGTCGAAATCGATCCATCCCTTGACGACGACGACGAAgaagaagaagaaacagaggaggaggaggaggaggaggaagaagtcgaagaggaggaggtcgaggaagaagaagaagtggaggaggaagaagtagaagaggaagaggttgaggaagaactggaagaggaggaagtagaagagatagaggtggaggaagaactggaagaggaggaagtagaagagatagaggtggaggaagaactggaagaggaggtagtagaagagatagaggtggaggaagaagaagaggaggGGGAACAAGGAGAAGAACAACAAGTAGAAGAAATGgaggaggaagaggaagaagaagtcgaagaggaggaggaggaggaggaggtggaagaggaagaagaagaggaacaagaacaacagcagcaagaagcagtggaggagaagaaggaagagcaacaacagcaacaccaagcagaagcagcaatggaggaacaagaagaagtgccaatggaggaGAAGGAGGAGGACAAACCGGCGGTGCCAGGTTCTCCACTCGATGCGGATAAGGATCGCAAAGATTACGGCCAACATATGGAGTTTGAGGGGCAAGACAAAAACTTGGGACCAGTTTCTTCTGTGGCTGAAAACCCTGAAGTAATGCCACCATCTAGTACGCATTGCATGGAAGAGAATAATGTCATGCTCAAAAAAAGTGACATACCTACATTGAAAAAGGAAGAGCTTCCCCTGAAATATGAAATTTCAAGTCATCCAAAATCAAGAGAAAATCTGACTTCTGTTGAAGTTTGCAGAAGTCAAGGATTAGATGTTGAAGTTGAAAATGCTGGATCCCTTCTGCAGAAGAAAACATTTAGAGGATACTGTGTGCCAGGTTGCAATAGCAAAGCTAATTTATGTGGTGACAATAATATTGATTCCAGGGCCAGGGCCACCAAGTCATCTAGTGATACTGTACAAGATATGGTTATTGGCCCCCTACCGAGAGATTGCCTTGTTGAGGATTCTAATGGTGGTCAGAATTCTAGAAACAAAATCATGCTGTCGGAGATGGAGTCAAGGGATGATGCGAAACAAATGACATCAAGCAGGACTAGAAATCTGTCTCCCAGTGCTGAGATTAAAGATGGAAACAAACGCCCCAGAATTATATGTGATTTTTTTGCTAAAGGATGGTGTATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATACTGGGGACAATACTGACCAGGAAGCTGAAGCAGACTCAGTTTCTACTTATCAGAAGAGACAATTGAAAGTGGAAGAAGGTATGTCATGTAACTTGTTTGTTCAAGCTAATGAGCAAGAAGCAACTCCTAGTTGGCATCCATCTCAAGAAAAACAGAAGTTTCCGCCGAGGGACAACTTGTTTCCAGATAATAGATTTCCATTTAGTGCATCAGACAATTATTTGAGCCCAAATCTTTCTTTGAATTCAACCTGTGCAGATGGAATGGCTACTCCTCGTAACCAACATATGTACAAAGGATATACTTCCACACTTTTGAGCCATTCGCCGAATTCGAGCCTGGTTACTCAATTTGCAGCTTCAAGTATGTCACTCTCCCACCGGATTCTAGCTCAATCAGGACGTTCGCTGCCTTTTAGTTCATCTTTAGGGGCTAGTAATGTGGATTCTCTAAAGTTTTTGAACACTGACAAAGAATATCTCACATCTAAGTCCACTTTCTCTGGTTCAGGGCGGGAAGATTTTTCTCTTGTTAGTTCGTCTAGGGTTCCATCATATCCTGCTGGATATAAATCAAAAATCTGTTCTTATGATTGGGAACCTTCTGTTCCCTTTCGACCATCTTTTTTTATTACTTCTATGAATGTATCATCTCCTGGAGATCTTTATGACCCTCTTCGTGATAGCATTGAGATACCTAATATAGGAGATGGGTCTTTGAAGGCTTCCCTTTTAATTCATGGATCAAATGTGCAGGTTTCATCACAGGTTCGGACATATGGTGATTCTGCTGTAGTTGGGGAACACATGTCCAATCTTAATGATGACAAAAGTTCTGTATCTTCTCATAATAAATTTTGTGAAAATGAGCCAAATaaaaattgtcttcctcatgaaaaagattgtcttccacctgaaaCAGAGATAACATCAGGAACTTATCAAGGTAAAATGGGCATGGGACAACATACCTTTGGTGTTGCAGATAGTACAAAAAATGAGAGAGATGTGACCGAGTGTGATGCTAGACGTCATGGTGAAGGATCAGGGCATAAAAAGAAGAGAGTAGACAGGGATAAGAAAAATCATGAAATGGATGTCGACTTTCAGATTGATGGCAGCATTCAGAAGGAATCAAAGGCATTAAAATTTTTTCGCGCAGCTCTTGTTGATCATGTTAAAGAGTTGTTAAAACCAGCTTGGCACGAGGGTCATCTTAGCAAGGATGCACACATTATGATAGTCAAAAAATCAGTTGACAAGGTTGTTAGCACCTTGGAACCCCATCAGATTCCGATCATGGATACTGCTAAGCAATATGTTTCTTCAAGTCAGGTGAAAATTGCAAAGCTGGTCAATGGATATGTCAATAAATATGGCAAATATTGA 2646 0.3333 MSIPDSPFAEDVEIDPSLDDDDEEEEETEEEEEEEEEVEEEEVEEEEEVEEEEVEEEEVEEELEEEEVEEIEVEEELEEEEVEEIEVEEELEEEVVEEIEVEEEEEEGEQGEEQQVEEMEEEEEEEVEEEEEEEEVEEEEEEEQEQQQQEAVEEKKEEQQQQHQAEAAMEEQEEVPMEEKEEDKPAVPGSPLDADKDRKDYGQHMEFEGQDKNLGPVSSVAENPEVMPPSSTHCMEENNVMLKKSDIPTLKKEELPLKYEISSHPKSRENLTSVEVCRSQGLDVEVENAGSLLQKKTFRGYCVPGCNSKANLCGDNNIDSRARATKSSSDTVQDMVIGPLPRDCLVEDSNGGQNSRNKIMLSEMESRDDAKQMTSSRTRNLSPSAEIKDGNKRPRIICDFFAKGWCIRGSSCSFLHIKDTGDNTDQEAEADSVSTYQKRQLKVEEGMSCNLFVQANEQEATPSWHPSQEKQKFPPRDNLFPDNRFPFSASDNYLSPNLSLNSTCADGMATPRNQHMYKGYTSTLLSHSPNSSLVTQFAASSMSLSHRILAQSGRSLPFSSSLGASNVDSLKFLNTDKEYLTSKSTFSGSGREDFSLVSSSRVPSYPAGYKSKICSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIHGSNVQVSSQVRTYGDSAVVGEHMSNLNDDKSSVSSHNKFCENEPNKNCLPHEKDCLPPETEITSGTYQGKMGMGQHTFGVADSTKNERDVTECDARRHGEGSGHKKKRVDRDKKNHEMDVDFQIDGSIQKESKALKFFRAALVDHVKELLKPAWHEGHLSKDAHIMIVKKSVDKVVSTLEPHQIPIMDTAKQYVSSSQVKIAKLVNGYVNKYGKY 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00727 881 Gene3D - 388 474 - -
Gma15g00727 881 ProSiteProfiles Zinc finger C3H1-type profile. 392 419 IPR000571 GO:0046872
Gma15g00727 881 MobiDBLite consensus disorder prediction 179 207 - -
Gma15g00727 881 MobiDBLite consensus disorder prediction 344 388 - -
Gma15g00727 881 SUPERFAMILY CCCH zinc finger 392 416 IPR036855 GO:0046872
Gma15g00727 881 Coils Coil 18 175 - -
Gma15g00727 881 MobiDBLite consensus disorder prediction 749 766 - -
Gma15g00727 881 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 171 880 - -
Gma15g00727 881 MobiDBLite consensus disorder prediction 1 233 - -
Gma15g00727 881 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 397 416 IPR000571 GO:0046872
Gma15g00727 881 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 171 880 - -
Gma15g00727 881 SMART c3hfinal6 393 418 IPR000571 GO:0046872
Gma15g00727 881 MobiDBLite consensus disorder prediction 749 780 - -
Gma15g00727 881 MobiDBLite consensus disorder prediction 12 148 - -
Gma15g00727 881 MobiDBLite consensus disorder prediction 149 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00727 Gma-Chr15 5977052 5983667 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma15g00727 zf-CCCH 5.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00727 - - gmx:100819734 1406.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00727 15 5977052 5983667 Gma15g00727 15 5977052 5983667 ECH
Gma15g00727 15 5977052 5983667 Gma13g02101 13 36130920 36137697 GST