Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00716 ATGAAGTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGATGATGACCTGAAGCTACGAGCATTTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTTGGTGATTGTGAAGAAGGGTGAAAGTGATTTACCTGGCCTGACAGATGTTGAAAAGCCAAGGATGAGGGGTCCAAAGAGAGCTTCCAAGATTCGCAAGCTGTTCAATCTGTCTAAGGAGGATGATGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGGGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGACCCTCCAAAGAAAGAGGGCAAGGATTGCAGATAAGAAGAAGAGAATTGCCAAAGCAAAATCAGAGGCAGCAGAGTACCAGAAACTTCTTGCCTCCAGATTGAAGGAGCAGAGAGATCGCCGGAGTGAGAGCTTGGCTAAGAGAAGATCAAAGCTTTCCAGTGCAGCTAAACAAGCTGCCACAGCATAA 750 0.4707 MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVVGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGESDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRDRRSESLAKRRSKLSSAAKQAATA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00716 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Gma15g00716 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 248 - -
Gma15g00716 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Gma15g00716 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Gma15g00716 249 Gene3D - 133 234 - -
Gma15g00716 249 Coils Coil 189 216 - -
Gma15g00716 249 MobiDBLite consensus disorder prediction 219 237 - -
Gma15g00716 249 PIRSF RPS6e 1 249 IPR014401 GO:0003735|GO:0005840|GO:0006412
Gma15g00716 249 MobiDBLite consensus disorder prediction 219 249 - -
Gma15g00716 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 248 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00716 Gma-Chr15 5886101 5888502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00716 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 71.486 3.35e-119 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00716 K02991 - gmx:100800507 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00716 15 5886101 5888502 Gma13g02112 13 36223429 36225654 GST
Gma07g01931 07 40554440 40557160 Gma15g00716 15 5886101 5888502 PCT
Gma15g00716 15 5886101 5888502 Gma07g01931 07 40554440 40557160 PCT