Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00715 ATGGCCATGCCTCCCATTGATCGCTGGGACGCTGATAAAATACTTCGATTATATTTGCATGATTATATGGTCAAAAGGGGAATGCACAACGCCGCTGAGATTTTCAAGAAGGAAGCACAAGTTCCCGATCACCCTGTTTATTCAGTGGTTGATTCTCCAGATGGATTCCTGCATGAATGGTGGTCTATTTTCTATGAGGTATTTACCTCTAGGCAAGGGAAGGACCAAGAGACCGGGCAAGGGTCCTCTAGTAAGCTGGTCCCAATGATGACACAAAACGCAAGGAATGATGCTCCTCCTAAAATCCCTCAAATATCAATGAGTGAGCACAGAACTCCACAATTTCAAGTCAACTCCAGCTTTAACAACATGATGACTCAACCAGCCGTTTGTGTAATTCCTTCAATAATGTACAATAAAGAAGAGCGTCTTGGATATCTGCCCGAAAATGTTGAACCAAGTTTGCATGATGTTATAAATAGTAACCTGACGTTCTTGTCAGGGACTAGTTCAAATTATCCACTGCAAGATGTAGTAGGCAAGCAGGCCCAGAAGCAAGTCTTTAAGGATAGTGGAATTGGCATGAGTGTGGAGAGGGATATACCTAGGGACCCACTGGATGTAATGCAAAAATCAATGCTTCCTTTAGATGGACTTCATGAAACAAAAGCCAATGAAGCTCTCAATATAGTACCACTAAATGGATGGCCAATAAATAACCAAGTACTAACTTCATCTTTGCAACCACCAAATTGTCGACAGAAGTGTCAAATGTTGAAAACGCAAAATCAGGATGCAATCCTTGCTCAAGCAATTGCAGGTACTTCAAAAAATCAGACTTCCACAGTTCCTGAAAACTCTAGCAAATGCAATACAACGAAGATTTCTGAGATTGAATCAAGTGATAAGGATAAGCAGATGATAAACCAAATGATTACAACTGTAGAACATCAACACCAGCAGGATCAACAAATTCAGGCGCAATCCCAGAATAATAACAAAAAAACAAAGACAACAGAATTCATAAGACCTAGAGAAAGTGCCCAGAACTGTGAGGATACAGCCAATGGAAAACCCATGGATGAAAATGTGGAGTCTTTCCTGTCTTTAGAAAATGAACATGCTGATCATAAAATTGCACCTTTCAGCAATCTGAAACGAACTTCAGCTACATGCAGAAATGAAAAGAAAGGTTTTTCTTTCGAAGAGGTTGGTTGCCTTCATTCAAGCAAAAGCAAGGTTTTGTCTAGCCATTTTTCATCAGATGGAAAAGTTTTGGCAAGTGCTGGACATGAGAAGAAGGTTTTCATTTGGAACATGGAAAATTTTGATTGTGTAACTACTACAGAAACACATTCACTTCTTGTTACAGATGTTAGGTTTAGATCAGGTTCAACTATCTTTGCAACTTCTTCCTTTGATAGATCTGTGAGACTATGGGATGCTGCCAGACCAACCAGTTCTCTGCTCAAACTTACTGGGCATGCCGAACAAGTAATGTCATTGGACTTCCACCCAAGAAAAGTGGACCTTCTTTGCTCATGTGATAGCAACGATGTAATTCGACTGTGGAATATCAATCAAGGTGTTTGCATGCATATATCTAAGGGAGGTAGTAAACAGGTCAGGTTCCAGCCTTGTTTTGGGAAGTTTTTGGCTACTGCCACAGGAAATAATATCAAAATATTTGATGTGGAGACCGACAGTCTTCTGTACAATCTAGAGGGACATGTTAAAGATGTTCGTTCCATTTGTTGGGATAAAAATGGAAACTATGTTGCCTCCGTCAGTGAAGATAGTGCACGTATCTGGTCATCAGACGGACAATGCATAAGTGAATTGCATTCAACCGGAAACAAGTTCCAATCATGCATATTTCATCCGGAATATCATAACCTCTTAGTTATTGGTGGTTATCAGTCCCTGGAATTGTGGAGTCCCGCTGAGAGCAGTAAAACATGGGCTGTTCATGCTCACAAGGGATTAATTGCTGGACTAGCAGATTCTCCCGAAAATGAAATGGTTGCCTCAGCTAGCCATGATCATTGCGTGAAACTATGGAAATGA 2067 0.4059 MAMPPIDRWDADKILRLYLHDYMVKRGMHNAAEIFKKEAQVPDHPVYSVVDSPDGFLHEWWSIFYEVFTSRQGKDQETGQGSSSKLVPMMTQNARNDAPPKIPQISMSEHRTPQFQVNSSFNNMMTQPAVCVIPSIMYNKEERLGYLPENVEPSLHDVINSNLTFLSGTSSNYPLQDVVGKQAQKQVFKDSGIGMSVERDIPRDPLDVMQKSMLPLDGLHETKANEALNIVPLNGWPINNQVLTSSLQPPNCRQKCQMLKTQNQDAILAQAIAGTSKNQTSTVPENSSKCNTTKISEIESSDKDKQMINQMITTVEHQHQQDQQIQAQSQNNNKKTKTTEFIRPRESAQNCEDTANGKPMDENVESFLSLENEHADHKIAPFSNLKRTSATCRNEKKGFSFEEVGCLHSSKSKVLSSHFSSDGKVLASAGHEKKVFIWNMENFDCVTTTETHSLLVTDVRFRSGSTIFATSSFDRSVRLWDAARPTSSLLKLTGHAEQVMSLDFHPRKVDLLCSCDSNDVIRLWNINQGVCMHISKGGSKQVRFQPCFGKFLATATGNNIKIFDVETDSLLYNLEGHVKDVRSICWDKNGNYVASVSEDSARIWSSDGQCISELHSTGNKFQSCIFHPEYHNLLVIGGYQSLELWSPAESSKTWAVHAHKGLIAGLADSPENEMVASASHDHCVKLWK 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00715 688 ProSiteProfiles Trp-Asp (WD) repeats profile. 407 448 IPR001680 GO:0005515
Gma15g00715 688 MobiDBLite consensus disorder prediction 315 357 - -
Gma15g00715 688 ProSitePatterns Trp-Asp (WD) repeats signature. 512 526 IPR019775 -
Gma15g00715 688 SUPERFAMILY WD40 repeat-like 401 688 IPR036322 GO:0005515
Gma15g00715 688 SMART WD40_4 485 525 IPR001680 GO:0005515
Gma15g00715 688 SMART WD40_4 607 646 IPR001680 GO:0005515
Gma15g00715 688 SMART WD40_4 528 564 IPR001680 GO:0005515
Gma15g00715 688 SMART WD40_4 649 688 IPR001680 GO:0005515
Gma15g00715 688 SMART WD40_4 567 605 IPR001680 GO:0005515
Gma15g00715 688 SMART WD40_4 442 481 IPR001680 GO:0005515
Gma15g00715 688 SMART WD40_4 400 439 IPR001680 GO:0005515
Gma15g00715 688 MobiDBLite consensus disorder prediction 315 356 - -
Gma15g00715 688 CDD WD40 403 688 - -
Gma15g00715 688 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 481 IPR001680 GO:0005515
Gma15g00715 688 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 449 481 - -
Gma15g00715 688 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 3 688 IPR044716 GO:0003714
Gma15g00715 688 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 656 688 - -
Gma15g00715 688 ProSiteProfiles Trp-Asp (WD) repeats profile. 492 534 IPR001680 GO:0005515
Gma15g00715 688 Pfam LisH 20 39 IPR006594 GO:0005515
Gma15g00715 688 Pfam WD domain, G-beta repeat 444 481 IPR001680 GO:0005515
Gma15g00715 688 Pfam WD domain, G-beta repeat 489 525 IPR001680 GO:0005515
Gma15g00715 688 Pfam WD domain, G-beta repeat 570 605 IPR001680 GO:0005515
Gma15g00715 688 Pfam WD domain, G-beta repeat 657 688 IPR001680 GO:0005515
Gma15g00715 688 Gene3D - 253 544 IPR015943 GO:0005515
Gma15g00715 688 ProSiteProfiles Trp-Asp (WD) repeats profile. 656 688 IPR001680 GO:0005515
Gma15g00715 688 Gene3D - 545 688 IPR015943 GO:0005515
Gma15g00715 688 ProSiteProfiles LIS1 homology (LisH) motif profile. 11 43 IPR006594 GO:0005515
Gma15g00715 688 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 492 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00715 Gma-Chr15 5875531 5883882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00715 425 604 U-box Gene Family AT2G33340 25.134 7.15e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gma15g00715 WD40 0.0048 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00715 - - gsj:114387334 1372.45