Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00686 ATGTACATAGCTTCCATGGGAAGGTCTTTCAAGGACTCCTTGAAACTGCTTGAAGCTGATATTCACCATGCCAATACCCTGGCGTCAGATTTTCCAAGGGAATATGATGGTGCGTGCCTTCAGATGAGAATGTCATATAGTCCAGCAGCACACCTGTTTCTCTTTTTGGTGCAATGGACAGACTGCAATCTTGCCGGAGCCCTTGGACTGTTAAGAATCCTAATATACAAGGTGTATGCGGATGGGACAACTACCATGTCTACCCATGAAAGAAAAGCAAGTATCAGGGAATTCTATGCGGTCATATATCCCTCTTTATTGCAACTGCAAAAAGGTGTAACAGATACAGAGGATACAAAACAGAAGGCTGTATGCATGGAGAGGTATCGCAAGAGAGATGATGAGGAGCACAGACAACCTTCAGACATAGACATTGAAAGAGAAGAAGAATGTGGAATATGCATGGAGATGAATAGTAAGATTGTGTTGCCCGACTGCAACCATGTCATGTGCCTGAAATGTTATCACGAATGGAGGACAAGATCACAATCATGCCCTTTTTGCCGCGACAATCTTAAGAGAGTAAACTCGGGTGATCTCTGGGTGTTCACTGACAATAGGGATGTAGTAGACATGGCAACAGTGACAAGGGAGAATCTTAGAAGGCTTTTCATGTACATAGATAAGTTGCCTTTGGTCATTCCAGACTTTCTCTTTGACACATATGACTCTCACCTAAGATGA 744 0.4315 MYIASMGRSFKDSLKLLEADIHHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYADGTTTMSTHERKASIREFYAVIYPSLLQLQKGVTDTEDTKQKAVCMERYRKRDDEEHRQPSDIDIEREEECGICMEMNSKIVLPDCNHVMCLKCYHEWRTRSQSCPFCRDNLKRVNSGDLWVFTDNRDVVDMATVTRENLRRLFMYIDKLPLVIPDFLFDTYDSHLR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00686 247 PANTHER RING FINGER PROTEIN 41, 151 4 247 - -
Gma15g00686 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Gma15g00686 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 198 IPR013083 -
Gma15g00686 247 SMART ring_2 151 188 IPR001841 -
Gma15g00686 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Gma15g00686 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Gma15g00686 247 PANTHER PEROXISOME BIOGENESIS FACTOR 10-LIKE 4 247 - -
Gma15g00686 247 SUPERFAMILY RING/U-box 140 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00686 Gma-Chr15 5649213 5652737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00686 143 192 C3H Transcription Factor Family AT5G41350 42.593 7.20e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00686 K25840 - gmx:100789769 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00686 15 5649213 5652737 Gma13g02142 13 36476811 36480475 GST
Gma07g01898 07 40239137 40242913 Gma15g00686 15 5649213 5652737 PCT
Gma15g00686 15 5649213 5652737 Gma07g01898 07 40239137 40242913 PCT