Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00662 ATGATGTCAAACGAGGAATTCGATTACTCGTACCTATCGGACGACGACGGAGACGTCGCCGATGACGATAAGCTCTGCATCGATCTGGACACAGTTATGAGCGTTCTCGACGAGGACGCCGATCCTTCCGAGAGTAGTCCTGAGGATTTTTCATTGAAAAATATTTCTCCCGGTGAATCTGGCATCCATGATAATTTTCTACTTCAAAATGGGAATTCTGTCCTTGAATGTGAACATGAAAACCAGGGACCTTCATCACAGACTTTTTCATCCCCAAATGCTCTTGCTGGTGGTTTCAGGGACTCCTCCATGCTTGAAAGTGATGAATTTTGCTTCACAGAAATGACAGGAGTTTCTAATTGTGAGACACCTGCTTACATTGCAGACAGAAGGTTCCCTGTTCCTGAGGCGAATTCAAGCAGCGTAGCTGTCTGTGGAGATAATTTGAACCTGCCTCTGTGGAAGTGTGAAAATGACAGCCAAATCAAGCATATAGGATATGATGCACAATCTGAACATGCTTCACATGGTTCTATCATTGAAAATATTGACTTAAATTTTGGAGATTATGAAACCTATATGGAAGACATTATTGGACTTTCTGGTAAACAGGAAAATGACTCGTGTACATCTTTTGAAATGTCGTTTGTGGATGCTGATAGATCTTCACGTGTTGCAACTTCAACTGATTCTTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAGTGACTATTATCCATCTTTGAATTGTTACCAAGGTATGGATGATAGACCTGTTGTTGCCAACAGTTCTGGTTGTTTGCCTAATGGTGTTTATCCTCATGTGCGGAAAAATGAAGAAATGGTGAGGAACATGAAGGTTGCTAAAATGGAGTTATTTGCCGATACAAGTAGTGGCATGCATTCCAGCATTAATGGTGGAATATCTTTTCAAGATAGTCAATTTAGGTTTGCAGATAGTAAATATGCATCATCTTTTCCTGGTAATGTTCTATTTGAAGACAACGCGTCAGTGGAACTTTCAACTTGTGGTTCATATATTTCAAGAGAAGGCCAATCACTTACTGTCAAAGCCGAAAGAGATGAACTGATTATGCCTTACCAAAACTCTGTTCACAGTAATGATGCTGAGTTCAATGTAGGTCAAGAGATGAAACAACTACCTGGTATTTTCCCTGCTGTTGGATGTCAGGGTAATGATTTCTTTAAGTGCAGGGATAAGGTTACAATTGTAACAAGTCAGAAAGCCAAATATTATCAAGATGGTATTGATGGAGCTGCCAATAACTTTCAAGCAAACATGGGAAATTTGAATTTAAAACCATTAGACAAATCTTTGTATAATGCCCAGATATCTATTGCCAGTGGGAAGCAGTATAATTGTGTTATGAGTGAAGGAGAGGGCAAAGCAATTGAACATAGAAGTATTGATTCTCAGCTTTCAAAAGGAAGCATTGAGAGATCCATTATTGAGGATGATTCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTATAAGTCGATCAACAGTGCTTGGGAATTCCCTTATTACATCACAATCTTCTAGAGGTGGTTATACACATTCTTATATGGTGGGAAGTATGGGGCCCAAGGCGCGTGACGAGCAGTACATATTACGAGTTGCATTGCAGGATCTATCCCAACCGAAGTCAGAGGTTAGTCCACCAGATGGTCTGCTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCTGGGGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCGACCATTGGTTTAATATTAAAGGAAAGACCTCCATTGCTGAATAAGTGCAACAATGCCCAAAAAAGTGAATTAGAAACTTTGAATCTGGATGCAGATGATGATCAGCTTCCTGAGAATGGCATAGTGAAGAACGAATCTAATATGTGTCAGGTGTCTAGTAGAAATCCAAACCAGAACATGAATTTGTTATTGCATGCGAAGGGAAGGCCATCTGCAGGAACCCTTATTGTTTGTCCAACTAGTGTCCTGCGGCAATGGGCTGAGGAGTTGCACAATAAGGTAACCTGCAAAGCAAAACTCTCTGTCCTAGTATATCATGGAAGCAATCGAACCAAAAATCCTCATGAGCTTGCCAAGTATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTTCCTAAGCAGCCTCTAGTTGACAAAGATGATGAAGAAAAAGGAACTTATGATGATCATGCAGTATCAAGTAAGAAAAGGAAATGCCCTCCTAGTTCTAAAAGTGGAAAGAAGGGATTGGACAGTGCGATGCTTGAGGCTGTTGCTCGTCCTCTTGCAAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGAGCCAAGCGTAGATGGTGCTTGTCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTTTAAGATACGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCTATCAGCAGAAGTCCATCAAAAGGATACAGAAAGCTACAAGCTGTTTTAAAGACAATAATGTTACGTCGGACAAAAGCCACACTTCTTGATGGGGAGCCTATCATTTCCTTGCCACCTAAATCTGTGGAGTTGAAAAAAGTGGAATTTTCACCGGAGGAACGAGATTTCTATTCCAGACTAGAGGCTGATTCGCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAACTATGTTAACATTTTGTTGATGCTTTTGCGCCTTAGACAAGCATGTGATCATCCTCTCCTTGTCAAGCGTTACAATTCTAACTCTCTCTGGAAATCCTCAGTTGAGATGGCAAAGAAGCTTCCTCAGGAAAAACGATTATGTCTTTTAAAATGTTTAGAGGCATCATTGGCCCTCTGTGGTATCTGTAATGTTTCTATGCAGGACCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTTTGTAACCAGTGCATTTGTGAATATCTTACTGGTGATGACAATCAGTGCCCTGCTCCAAACTGCAAAACTCGACTAAGCACGCCTTCAGTGTTTTCCAAAGTCACACTGAATAGTTCTTTTTCTGATCAGCCTTGTGATAATTTGCCTGATTACTCTGGTTGTGAAGTGGAGGAATCTGAGTTTTGTTCTCAGGCTCAGCCATATGATTCTTCAAAAATTAAGGCTGCACTTGAGGTGTTGCAGTCGTTGTCTAAACCACAATGCTTTGCTTCCCAAAACAATTCTGTGCAGAGCACTTCTGGGGAAAGTACCGATGGCCTTGGTAGCTCCTCTAGTGCTGACAGAATGAAATCCTTGAATGAAATTCCTGAGAGTCAAAATGTGCTTGAGGAGAGAAGCTCTAATAATTCAGTTGGTGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACAAGGATGCTAGATATACTTGAAGCATGTCTTAAGAATTCGTCGATCCAGTATAGAAGACTGGATGGAACAATGTCAGTCACTGCAAGAGATAAAGCTGTTAAAGATTTTAACACTCTCCCTGAGGTTTCAGTTATGATTATGTCTTTAAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCCTGCCATGTTCTTATGCTAGATCTATGGtggaatcctacaactgaagatcaggcaatagaccgagcacatcgaattggacaaaCTCGTCCTGTCACAGTTTTACGGTTAACTGTTAGAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAAAAGCGAAAAATGGTTGCGTCTGCCTTTGGAGAGGATGGAACTGGTGGTTGTCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTTATGATGTGA 3993 0.4045 MMSNEEFDYSYLSDDDGDVADDDKLCIDLDTVMSVLDEDADPSESSPEDFSLKNISPGESGIHDNFLLQNGNSVLECEHENQGPSSQTFSSPNALAGGFRDSSMLESDEFCFTEMTGVSNCETPAYIADRRFPVPEANSSSVAVCGDNLNLPLWKCENDSQIKHIGYDAQSEHASHGSIIENIDLNFGDYETYMEDIIGLSGKQENDSCTSFEMSFVDADRSSRVATSTDSSICQGSNVPNDFSDYYPSLNCYQGMDDRPVVANSSGCLPNGVYPHVRKNEEMVRNMKVAKMELFADTSSGMHSSINGGISFQDSQFRFADSKYASSFPGNVLFEDNASVELSTCGSYISREGQSLTVKAERDELIMPYQNSVHSNDAEFNVGQEMKQLPGIFPAVGCQGNDFFKCRDKVTIVTSQKAKYYQDGIDGAANNFQANMGNLNLKPLDKSLYNAQISIASGKQYNCVMSEGEGKAIEHRSIDSQLSKGSIERSIIEDDSDVCIIEDISHPAPISRSTVLGNSLITSQSSRGGYTHSYMVGSMGPKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIGLILKERPPLLNKCNNAQKSELETLNLDADDDQLPENGIVKNESNMCQVSSRNPNQNMNLLLHAKGRPSAGTLIVCPTSVLRQWAEELHNKVTCKAKLSVLVYHGSNRTKNPHELAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGTYDDHAVSSKKRKCPPSSKSGKKGLDSAMLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRSPSKGYRKLQAVLKTIMLRRTKATLLDGEPIISLPPKSVELKKVEFSPEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLPQEKRLCLLKCLEASLALCGICNVSMQDPPEDAVVSVCGHVFCNQCICEYLTGDDNQCPAPNCKTRLSTPSVFSKVTLNSSFSDQPCDNLPDYSGCEVEESEFCSQAQPYDSSKIKAALEVLQSLSKPQCFASQNNSVQSTSGESTDGLGSSSSADRMKSLNEIPESQNVLEERSSNNSVGVGEKAIVFSQWTRMLDILEACLKNSSIQYRRLDGTMSVTARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGCQSRLTVDDLKYLFMM 1330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00662 1330 MobiDBLite consensus disorder prediction 1125 1148 - -
Gma15g00662 1330 SMART ultradead3 571 872 IPR014001 -
Gma15g00662 1330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 903 1329 IPR027417 -
Gma15g00662 1330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 560 895 IPR027417 -
Gma15g00662 1330 SMART helicmild6 1189 1272 IPR001650 -
Gma15g00662 1330 Gene3D - 910 1329 IPR027417 -
Gma15g00662 1330 Pfam SNF2-related domain 595 972 IPR000330 GO:0005524|GO:0140658
Gma15g00662 1330 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 483 1329 - -
Gma15g00662 1330 Pfam Helicase conserved C-terminal domain 1173 1272 IPR001650 -
Gma15g00662 1330 MobiDBLite consensus disorder prediction 750 785 - -
Gma15g00662 1330 CDD DEXDc_SHPRH-like 575 895 - -
Gma15g00662 1330 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 483 1329 - -
Gma15g00662 1330 Gene3D - 785 896 IPR038718 -
Gma15g00662 1330 Gene3D - 669 759 IPR038718 -
Gma15g00662 1330 Gene3D - 545 639 IPR038718 -
Gma15g00662 1330 MobiDBLite consensus disorder prediction 750 771 - -
Gma15g00662 1330 ProSitePatterns Zinc finger RING-type signature. 1030 1039 IPR017907 -
Gma15g00662 1330 SUPERFAMILY RING/U-box 1009 1068 - -
Gma15g00662 1330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1004 1066 IPR013083 -
Gma15g00662 1330 ProSiteProfiles Zinc finger RING-type profile. 1011 1054 IPR001841 -
Gma15g00662 1330 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 685 857 IPR014001 -
Gma15g00662 1330 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1155 1325 IPR001650 -
Gma15g00662 1330 CDD SF2_C_SNF 1175 1282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00662 Gma-Chr15 5433604 5442348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00662 465 1329 RAD5 or RAD16-like Gene Family AT1G61140 60.407 0.0 975
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma15g00662 SNF2_N 1.8e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00662 - - gmx:100805307 2426.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00662 15 5433604 5442348 Gma15g00662 15 5433604 5442348 ECH
Gma15g00662 15 5433604 5442348 Gma13g02167 13 36714346 36723801 GST
Gma07g01863 07 39896708 39905480 Gma15g00662 15 5433604 5442348 PCT
Gma15g00662 15 5433604 5442348 Gma07g01863 07 39896708 39905480 PCT