Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00630 atgggaagagcaccttgttgtgacaagaatggtctcaagaaagggccatggacaaccgaggaggaccagaaactcattgattacattcagaaaaatggatatggcaattggaggacactcccaaagaatgctgGGTTGCAAagatgtggaaagagttgccgtctccgttggacaaactatctccggccagatataaagcgaggtcggttttcatttgaggaggaagagacaataattcaactacatagcattcttggaaacaaGTGGTCTGCGATTGCATCTCGCTTACCAGGAAGGACAGACAATGAAATAAAGAACTATTGGAACACTCACATTAGAAAAAGGCTTCTGAGAATGGGAATTGACCCTGTGACACACAGTCCTCGACTTGATCTATTGGACATCAATTCCATTCTAAACGCATCTTTCTATGGTTCATCACAAATCAACATCCAAAGACTCCTTGGCATGCACCAGTACATGGTGAACCCTGAGCTTTTAAAATTGGCTTCTTCACTCTTCTCCACCTCACAGCAGCAACACAATGACCCTGATGACATGCCTGCTCAAAAAGGTCAATTACAGAACCAGCTTTGTGATCCTCAAATTCAGAATCATGTTCCACACTTTGTCCAATTTCAAGATCCGGTTCAAGAGGTGCCTGCATGCAGCACCATGTTCAGCACCCCTTGTGTTTCAATTCCTCTAACTCAACCACAGTTGGTTGAGCCAAATAATGTGGACCAATATCCATCGTCAACTTTCACAGACTTCAGTTACCAACAACTAAGTGATTGGCAACTATCAAGCTTAACAGATGATTATGTCCCTCAATTATCAAGCTATAATTATTATAGTTCTGATGGTCAAAATCTCATGTATGATCCATTGTCCGAGCCTTCAAATTTTCATTCCAATAACAGCAATCAGAACTTCAGGTTCGCTTCAGTTCTATCGACACCTTCGTCAAGCCCTACACCGCTGAATTCGAACTCCACGATAATCAATGGGAGCAACACAGAAGACGAGAGAGATCAAAGCTATGACAGTAGTAACATGTTGAAATTTGAAATCCCAGATATTTTAGATGTGAATGAGTTCATGTAA 1107 0.3171 MGRAPCCDKNGLKKGPWTTEEDQKLIDYIQKNGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDINSILNASFYGSSQINIQRLLGMHQYMVNPELLKLASSLFSTSQQQHNDPDDMPAQKGQLQNQLCDPQIQNHVPHFVQFQDPVQEVPACSTMFSTPCVSIPLTQPQLVEPNNVDQYPSSTFTDFSYQQLSDWQLSSLTDDYVPQLSSYNYYSSDGQNLMYDPLSEPSNFHSNNSNQNFRFASVLSTPSSSPTPLNSNSTIINGSNTEDERDQSYDSSNMLKFEIPDILDVNEFM 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00630 368 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma15g00630 368 CDD SANT 69 112 IPR001005 -
Gma15g00630 368 CDD SANT 16 61 IPR001005 -
Gma15g00630 368 Gene3D - 13 66 - -
Gma15g00630 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 267 - -
Gma15g00630 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 297 363 - -
Gma15g00630 368 Gene3D - 69 116 - -
Gma15g00630 368 SMART sant 13 63 IPR001005 -
Gma15g00630 368 SMART sant 66 114 IPR001005 -
Gma15g00630 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma15g00630 368 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma15g00630 368 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma15g00630 368 MobiDBLite consensus disorder prediction 318 341 - -
Gma15g00630 368 PANTHER PROTEIN ODORANT1-LIKE 297 363 - -
Gma15g00630 368 PANTHER PROTEIN ODORANT1-LIKE 1 267 - -
Gma15g00630 368 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma15g00630 368 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gma15g00630 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma15g00630 368 MobiDBLite consensus disorder prediction 318 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00630 Gma-Chr15 5164453 5166184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00630 1 368 MYB Transcription Factor Family AT4G21440 55.875 7.01e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma15g00630 Myb_DNA-binding 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00630 K09422 - gmx:102660551 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00630 15 5164453 5166184 Gma13g02202 13 36986511 36988317 GST
Gma07g01836 07 39557957 39559711 Gma15g00630 15 5164453 5166184 PCT
Gma08g00571 08 4707895 4709631 Gma15g00630 15 5164453 5166184 PCT
Gma15g00630 15 5164453 5166184 Gma07g01836 07 39557957 39559711 PCT
Gma15g00630 15 5164453 5166184 Gma08g00571 08 4707895 4709631 PCT