Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00628 ATGGGGAAAAAATCGAGTCCGGCGGAGGGGGAAGAAGCGGTGCCGGAGCATCTGCGGTGCAGCCGTACGGACGGGCGGCAATGGCGGTGCCGGCGGCGAGTGAAGGAAAACCTAAAGCTGTGCGAGATTCACTACGTGCAAGCTCGGCGTCGGCAGCACAAGAAGACGCTGAAGCTTAAGAGAAAGAGGCAAAACGACGCCGTTGAGGTTCAGATTGGGGCCAAGCGGGACCGAAAATCGAGAGAGGCATTGGTCAATAGGAGGAACCAATTGGAGCTCATAAGGATGGTTCTGCAGAGGGAGGTTGAGAAGAAGAAGAAGAAGCAATCGCAATTGAATTTGAATTTGCATTTGCATTTCAATCACGAGTTGAAGAAGGAACTGCCGAATGGGGTTATGGCTATTGCGTCCAATATGGCATCTTCTCGTTACTTCAGGTCCAAGAATGCTGAGAGGGGCTCTGTTAGTAAGTTGCAGTGTGGACAAAGCATAAAGAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCTTGGAGTCTTGTAATGTGTTCAAGCTGCCAGAGAGAGTTTTTCTGCATGGAGTGCATTAAACAACGGTATTTTGCTACTCAAAATGAGGTTAAGATGGCATGTCCAGTTTGTCGAGGAACTTGCACCTGTAAAGATTGCTTGTCAAGTCAATACGAAGAGAGTGAAAGTAAGGAATATTTGGCTGGTAAAAACAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGTATGCTCCTTCCTGTACTAAAACAAATAAAAGAAGACCATCATGTAGGCGTAGAAAAAACAGCAAAAATCAAAGGTGGGAAAAGAACTTCTGATATTATCATCAAGCCTGTCGATTTTGTCTGCAACGAGAAAAATTACTGCAATTACTGCAAAACACCCATTTTGGATCTTCATAGAAGCTGCCTTAGTTGTTCCTACAGTCTTTGCTTAAGCTGTTCTCAGGCATTAAGTCAAGGAAGCACCTCTGAAGAAATCAACTCTTCTATATCCAACCTACCTGACAAAATAAATGCATGCATTTTTAGTGAAGGTCACCTTTTGGATGATAAGGTCATTTCTAATGGCAATTTAACTGATACCTCAACATTAGTTGAGTGGACAAATTGTAATGGTGCTGACATTGTGTCATGCCCACCTACAAAGCTTGGTGATTGTGGTGATAGCCACCTTGATTTGAAATATGTCTTTCCCTTAAGTTGGATCAAAGAAATGGAAGTAAAGGCAGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAACTTTGGATAGAAGTTCAAGCTGCTCACTGTGTGTTGACAAAGATCATAAAACTAGCAGATACAAGCAGTTACCAGAAGCAGCTCAAAGAGAAGATTCTAATGATAATTTCTTGTTTTATCCTACAATTTTGGACATCAGTTGCAATCATTTTGAACACTTTCGGAAACACTGGGGAATAGGCCATCCTGTAGTAGTGCGAGATGTGCTCCAAAGTATGCCAAACCTTAGTTGGGATCCACTGGTCATGTTCTGTACTTATCTTGAGAGGAGCATGACAAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTTTGAGGTGGAGATTAACGTTAGTCAGTACTTTACTGGGTCTCTTAAATGTCAACCTCAGAAAAATAATTGGCATGAGATGCTGAAACTTAAAGGATGGTTGTCTTCCCAACTATTCAAAGAACAATTTCCAGCTCATTTTGCTGAAGTAATTGATTCTCTTCCAATTCAAGAATACATGAATCCCTGGTCTGGTCTTCTGAATTTAGCTGCAAATTTGCCACAGGGGAGTACAAAACATGACATAGGACCTCATGTTTATATTTCATATGGCTGTGCTGATGAAGAAGCTGATTCCGTGACAAATCTTTGTTACGACTCATATGATATGGTTAATATTATGGCACATACCATGGACATCCCTCTCTCTACAGATCAGCTTGCTAAAATAAGTAAGTTGTTGAAAAAACACAAAACTCTATGTCAGAAGGTGTCATCATCTAAAACTACTAGTGAGCATTCAGAAGACAGGGAACAAAATGAAATGCATGGTATGGTAAGAGAAGGAACTGACTTTCTAAGGAGAGTCAATAGAACAGCTTCCATCTCTACTGAAGCCAAACCGATATCTAATCAGAAGTTAGACACCAATATTTCTGATGATGAAGAATGTGGTTCCGATTCTGAAACTGAAAAGGCACAAAGCTCTTTACCTTTCCAAAGGAGAGTTCTAAGCACTGAAATGTCTCCAGATCATAATCCTAGAAATCCCTTTGAAAACTCAAACAGTGATAAAAGGAAGAAGTTTACTGAGAATTCTGGTGCTCATTGGGATGTCTTTCGAAGACAGGATGTGCCCAAGCTCTTAGAATACCTCAAAAGACACTCTGATGAATTTTCTTATAATAGTGAATGTCACGAGAAGatggttcatccaattctggatcagagcttctttcttgacaatactcacaagatgagacttaaggaggagtttaaaattgaaccatggacttttgagcaacatgttggagaagctgtcatcattccttctggatgtccataccagattaggaatcctaagtgttgtgtacatgtggaattggaatttgtgtcccctgagaatgtctctgagtgtatccaattgattgatgaggtccggctgcttccagaagaccataaagcaaaaggagaaaagctggagGTGAAAAAAATGGCCCTTTATAGCATGAGTACAGCAATAGAAGAAATACGTGAGCTTACCTGCAAAACATGA 2847 0.3678 MGKKSSPAEGEEAVPEHLRCSRTDGRQWRCRRRVKENLKLCEIHYVQARRRQHKKTLKLKRKRQNDAVEVQIGAKRDRKSREALVNRRNQLELIRMVLQREVEKKKKKQSQLNLNLHLHFNHELKKELPNGVMAIASNMASSRYFRSKNAERGSVSKLQCGQSIKKGRRKKCHWCQRSDSWSLVMCSSCQREFFCMECIKQRYFATQNEVKMACPVCRGTCTCKDCLSSQYEESESKEYLAGKNRVDRILHFHYLVCMLLPVLKQIKEDHHVGVEKTAKIKGGKRTSDIIIKPVDFVCNEKNYCNYCKTPILDLHRSCLSCSYSLCLSCSQALSQGSTSEEINSSISNLPDKINACIFSEGHLLDDKVISNGNLTDTSTLVEWTNCNGADIVSCPPTKLGDCGDSHLDLKYVFPLSWIKEMEVKAEEIVCSYDFPETLDRSSSCSLCVDKDHKTSRYKQLPEAAQREDSNDNFLFYPTILDISCNHFEHFRKHWGIGHPVVVRDVLQSMPNLSWDPLVMFCTYLERSMTRYENNKDLLEACLDWFEVEINVSQYFTGSLKCQPQKNNWHEMLKLKGWLSSQLFKEQFPAHFAEVIDSLPIQEYMNPWSGLLNLAANLPQGSTKHDIGPHVYISYGCADEEADSVTNLCYDSYDMVNIMAHTMDIPLSTDQLAKISKLLKKHKTLCQKVSSSKTTSEHSEDREQNEMHGMVREGTDFLRRVNRTASISTEAKPISNQKLDTNISDDEECGSDSETEKAQSSLPFQRRVLSTEMSPDHNPRNPFENSNSDKRKKFTENSGAHWDVFRRQDVPKLLEYLKRHSDEFSYNSECHEKMVHPILDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPSGCPYQIRNPKCCVHVELEFVSPENVSECIQLIDEVRLLPEDHKAKGEKLEVKKMALYSMSTAIEEIRELTCKT 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00628 948 Pfam WRC 15 55 IPR014977 -
Gma15g00628 948 MobiDBLite consensus disorder prediction 754 781 - -
Gma15g00628 948 MobiDBLite consensus disorder prediction 688 712 - -
Gma15g00628 948 Pfam JmjC domain, hydroxylase 797 894 IPR003347 -
Gma15g00628 948 MobiDBLite consensus disorder prediction 693 712 - -
Gma15g00628 948 ProSiteProfiles JmjC domain profile. 606 911 IPR003347 -
Gma15g00628 948 PANTHER PROTEIN B160 11 947 - -
Gma15g00628 948 SMART cupin_9 587 911 IPR003347 -
Gma15g00628 948 Gene3D Cupin 478 920 - -
Gma15g00628 948 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 11 947 IPR045109 GO:0032454|GO:0033169
Gma15g00628 948 ProSiteProfiles WRC domain profile. 14 58 IPR014977 -
Gma15g00628 948 ProSiteProfiles Zinc finger RING-type profile. 172 218 IPR001841 -
Gma15g00628 948 SUPERFAMILY Clavaminate synthase-like 480 932 - -
Gma15g00628 948 Coils Coil 81 108 - -
Gma15g00628 948 MobiDBLite consensus disorder prediction 727 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00628 Gma-Chr15 5144401 5149832 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gma15g00628 JmjC 1.3e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00628 K15601 - gmx:100802129 1894.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00628 15 5144401 5149832 Gma13g02204 13 37001858 37007267 GST
Gma07g01834 07 39531839 39538119 Gma15g00628 15 5144401 5149832 PCT
Gma08g00573 08 4727377 4733349 Gma15g00628 15 5144401 5149832 PCT
Gma15g00628 15 5144401 5149832 Gma07g01834 07 39531839 39538119 PCT
Gma15g00628 15 5144401 5149832 Gma08g00573 08 4727377 4733349 PCT