Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00581 ATGTGGCTTTCTTTCTTCCATGAATTTGGTGATATTAGCTTGATAGCTTCAGCTGTTTTTCATTGCATGAGGAGTTCTCATATGGAGATTTCATCAATCAGAGGGCTACCTGAACTGGGGATAATAGAGGATCCTAACTTCCTCCATCAGTGGCAGTTAAACTCTATTGATACAACTAGCTTAAAAGGTGCTGCTTTTGGAGATATTTTGCAAAAGCACTCATTCTCTGATAACTCAAACTTCAACCCCAAAACATCCATGGAAACATCACAAACTGGAATTGAAAGATATGCAAAACAGCTCGGTGATAACAGCTGGAATCACAACAAAAGTCAACAACAGACACCAGAGACACAATTTGCTTCATGCTCAAATCTTCTTTCATTTGTTAATACGAATTACACAAGTGAATTGGGACTAGTGAAGCCTAAGGTGGAGATGGCGTGTCCTAAAATTGACAACAATGCTCTTGCAGACATGTTGATCTCTCAAGGAACCTTAGGAAATCAAAACTATATTTTCAAGGCTAGCCAAGAGACCAAAAAGATTAAAACACGTCCTAAACTTTCTCAACCTCAAGACCACATAATAGCTGAAAGGAAGCGAAGAGAGAAGCTCAGCCAACGGTTCATTGCTCTATCTGCTCTTGTTCCGGGCCTAAAGAAGATGGACAAAGCTTCGGTTCTTGGAGAAGCTATAAAGTATTTGAAGCAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAACAGGAAGAGAACTGTGGAATCTGTGGTAATTGTGAAGAAATCTCAGCTATCTAGTGATGCCGAAGACTCTTCTTCAGAGACTGGTGGTACATTTGTCGAGGCACTACCTGAAATTGAAGCAAGATTTTGGGAAAGAAATtgccttgacatttgggagtttcatcctgGATATAACCATTATTGCTCAGATGGATATGGAATTTTGCATGACAGTGAAGGATCTTGTGAGAAGTTTACGCTCAGCTTTTTCATATTTCGTGTGAAGAGTTATGCATTTTTCGGTCGTCCCCGAAAGAAAGAGATTCAAACAAGATTGATTATGGGTAATTTCCATCATCTACTACAATGGTACGCGCATTTCACCATAGAAGAAACAGATTCATTCACAAGTTTTTACCCGAAGGAACCATATTTACTCAAAGCATTCTTGTATTTATGCACTACTATGAGGCTTTACTAG 1212 0.3837 MWLSFFHEFGDISLIASAVFHCMRSSHMEISSIRGLPELGIIEDPNFLHQWQLNSIDTTSLKGAAFGDILQKHSFSDNSNFNPKTSMETSQTGIERYAKQLGDNSWNHNKSQQQTPETQFASCSNLLSFVNTNYTSELGLVKPKVEMACPKIDNNALADMLISQGTLGNQNYIFKASQETKKIKTRPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAIKYLKQMQEKVSALEEEQNRKRTVESVVIVKKSQLSSDAEDSSSETGGTFVEALPEIEARFWERNCLDIWEFHPGYNHYCSDGYGILHDSEGSCEKFTLSFFIFRVKSYAFFGRPRKKEIQTRLIMGNFHHLLQWYAHFTIEETDSFTSFYPKEPYLLKAFLYLCTTMRLY 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00581 403 PANTHER BHLH TRANSCRIPTION FACTOR 29 299 - -
Gma15g00581 403 SMART finulus 196 245 IPR011598 GO:0046983
Gma15g00581 403 Pfam Helix-loop-helix DNA-binding domain 193 240 IPR011598 GO:0046983
Gma15g00581 403 Coils Coil 229 256 - -
Gma15g00581 403 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 255 IPR036638 GO:0046983
Gma15g00581 403 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 190 239 IPR011598 GO:0046983
Gma15g00581 403 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 29 299 - -
Gma15g00581 403 Gene3D - 188 261 IPR036638 GO:0046983
Gma15g00581 403 CDD bHLH_AtNAI1_like 193 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00581 Gma-Chr15 4813677 4817270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00581 190 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 60.526 2.07e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma15g00581 HLH 3.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00581 - - gmx:100790824 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00581 15 4813677 4817270 Gma15g00581 15 4813677 4817270 ECH
Gma15g00581 15 4813677 4817270 Gma13g02256 13 37417504 37420694 GST
Gma07g01800 07 39170152 39172080 Gma15g00581 15 4813677 4817270 PCT
Gma15g00581 15 4813677 4817270 Gma07g01800 07 39170152 39172080 PCT