Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00548 ATGGCAGACAAGACTTGTGAGCTGAGGAAGTTGAATGGGGAAGAGCTGCTAGGATTAAAAATTCGGGAATTACAAAAGCTAGAGAAACTAATAAGGAAAGTCTCACAGTCTTCCTCAGAACTCTTGCAATGTCCAAAATTATTCTTCATGCAGGGAGTTGAACTAACGCAAGACAACCAACAACTGAAACGGTATCCATTTCTGGACTCTAATACAAGCAAGAAGAAGAATATGACGAGAAAGAAGATCCCAATCAAGAAGATCGACAACATAAACGCGAGGCAGGTAACATTCTCAAAGAGGAGAAAAGGTCTTTTCAAGAAGGCTCAGGAGCTGTCAACTCTCTGTGATGCTGAGATTGCTCTCATAGTCTTTTCCGCCACTGGCAAGCtctttgagtacgctagttcaagCATGCAACAAACACTTGAAAGGCGTAATCAGCATTCAGGGATTCAAGGATTGGATAATCCATCTATTGGTCAACAGCTTGGAAGTGACTCCTTTGGCATGCTGCCGTTGCGCAAGGAAATAGAAGATAAGACTAATGAACTGAGTCAGTTGAATGAGGAAGAGTTGCAAGGATTGAAAATAAAAGAATTGCAGAAACTGGAGGACATTCTTCAAAGACGTTGGACCACTATTTCAAAAACTAAGGACGAAAAAGTTATACAAGAGATCAACCACCTTAAAACAAAGGAAGCCAAACTTATGGAAGAGAACCAGAAATTGAAGCAGAGCTTCTTACAAGAACAAAGGCAATCATACGAGTCATTTACCTGTAGTTCATCTGAATTTCCTCCGGACAATGGTAGTTCAGACACATCTCTCAAGCTGGGGTTGTCTTTGTTTGAATGA 858 0.3986 MADKTCELRKLNGEELLGLKIRELQKLEKLIRKVSQSSSELLQCPKLFFMQGVELTQDNQQLKRYPFLDSNTSKKKNMTRKKIPIKKIDNINARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSATGKLFEYASSSMQQTLERRNQHSGIQGLDNPSIGQQLGSDSFGMLPLRKEIEDKTNELSQLNEEELQGLKIKELQKLEDILQRRWTTISKTKDEKVIQEINHLKTKEAKLMEENQKLKQSFLQEQRQSYESFTCSSSEFPPDNGSSDTSLKLGLSLFE 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00548 285 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 87 134 IPR002100 GO:0003677|GO:0046983
Gma15g00548 285 PRINTS MADS domain signature 115 136 IPR002100 GO:0003677|GO:0046983
Gma15g00548 285 PRINTS MADS domain signature 80 100 IPR002100 GO:0003677|GO:0046983
Gma15g00548 285 PRINTS MADS domain signature 100 115 IPR002100 GO:0003677|GO:0046983
Gma15g00548 285 PANTHER - 2 33 - -
Gma15g00548 285 PANTHER - 77 256 - -
Gma15g00548 285 Pfam K-box region 174 247 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma15g00548 285 CDD MADS_MEF2_like 80 151 IPR033896 GO:0000977|GO:0045944
Gma15g00548 285 Coils Coil 227 247 - -
Gma15g00548 285 Coils Coil 171 191 - -
Gma15g00548 285 SUPERFAMILY SRF-like 78 155 IPR036879 GO:0003677|GO:0046983
Gma15g00548 285 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 33 - -
Gma15g00548 285 PANTHER SERUM RESPONSE FACTOR HOMOLOG 77 256 - -
Gma15g00548 285 MobiDBLite consensus disorder prediction 259 285 - -
Gma15g00548 285 ProSiteProfiles MADS-box domain profile. 78 138 IPR002100 GO:0003677|GO:0046983
Gma15g00548 285 Gene3D - 90 159 IPR036879 GO:0003677|GO:0046983
Gma15g00548 285 ProSiteProfiles K-box domain profile. 164 255 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma15g00548 285 MobiDBLite consensus disorder prediction 259 279 - -
Gma15g00548 285 SMART madsneu2 78 137 IPR002100 GO:0003677|GO:0046983
Gma15g00548 285 ProSitePatterns MADS-box domain signature. 80 134 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00548 Gma-Chr15 4541471 4554588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00548 78 281 MADS-box Gene Family AT2G22540 47.257 4.20e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma15g00548 K-box 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00548 - - gmx:100779453 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00548 15 4541471 4554588 Gma15g00548 15 4541471 4554588 ECH
Gma15g00548 15 4541471 4554588 Gma13g02291 13 37694344 37701991 GST