Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00534 ATGGGTCTGCATCATCACAGAAAGTTGATGCCATTGCCAGAAATCTGCGGGTCAATTTGCCATGTGAAGAAGTCTGAGCTTTGTTCATCAGATTGCAAAGTTTGCCTCAAGATCTGCCTAACCAATTATTCTCCTCCAACGCTACCACCACAAGTTCCTCCTTTTCAATCATATGATGATGGTGCAGCAGATCAAGCATACAACCACAAAATCTCCACCTATTTGTTCCTTGCACTTGCTCTTCTAACTGCTGCTTTCTTTGTCGTTTGTTGTCGTGCCATCTATACCAGGTTTAGCTCAAGGAGGAGGGTATCATCAACATCAAGGCGCCAAAACCAAACACACCATGATGATGATGATTTTGTTGATGAAGAGAATGGCCCTATGGTGGACCACCCCATATGGTATATCCGCACCCTTGGCCTTCAGCAATCGATTATCAATGCCATCACAGTTTGTAAGTATAAGAAAGGAGAGGGCTTGATTGAAGGAACGGATTGTGCTGTTTGCTTGAGTGAGTTTCAAGAGGACGAGAATCTCAGACTTTTGCCAAAATGTCACCATGCTTTTCATCTTCCTTGTATCGATACCTGGCTTAGGTCTCATACCAATTGTCCTATGTGCCGGGCTCCAATTGTTGCTGACCTTGCAACTGCAAGGATGGAGTCTAGTTTTGTTGATTCAAGTTCCTTGGAAAACAGCCACATGGAAGTTTTGGAAAATAGTGCTCCTGATTCTGAATTGATGAATAATAGGGCAGAGGAGGAAGAAGGCCAATTGGAAGTTGAAGATGGAGTGAGGGTTTGTGAAACTGAAACCCCAGTTGAAGATGTGGCAAGCACTCTTCCTAGAAGTTCGGTTTCTCTGGATTCTTTTTCTTTTGCAAATTTCAATCTTGCTCTTGCAACAGTAGAGTCTAATGGTAACTCAAAAAGAGTGCTGGGAGGTGTGGATGATGATCCTACTGCTTCAAAGGGGGTTATTGGAAACGATTTGGCAACTAGTTCCAAAGGTAGCTCCTCTTTCAGGTTAGCGAGATATCTGCAGGGTGTTCCTAGTTCTTCAGTGAAAAGGTCACAGTCCTTTAATGGGAAATACCTTCTATCCTGGTATGGCTGCAGTCAGAAGAAGCCAAATGCTCCTCTGAGAAGCTTTTGA 1158 0.4361 MGLHHHRKLMPLPEICGSICHVKKSELCSSDCKVCLKICLTNYSPPTLPPQVPPFQSYDDGAADQAYNHKISTYLFLALALLTAAFFVVCCRAIYTRFSSRRRVSSTSRRQNQTHHDDDDFVDEENGPMVDHPIWYIRTLGLQQSIINAITVCKYKKGEGLIEGTDCAVCLSEFQEDENLRLLPKCHHAFHLPCIDTWLRSHTNCPMCRAPIVADLATARMESSFVDSSSLENSHMEVLENSAPDSELMNNRAEEEEGQLEVEDGVRVCETETPVEDVASTLPRSSVSLDSFSFANFNLALATVESNGNSKRVLGGVDDDPTASKGVIGNDLATSSKGSSSFRLARYLQGVPSSSVKRSQSFNGKYLLSWYGCSQKKPNAPLRSF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00534 385 Coils Coil 236 256 - -
Gma15g00534 385 SMART ring_2 167 208 IPR001841 -
Gma15g00534 385 Pfam Ring finger domain 166 209 IPR001841 -
Gma15g00534 385 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 376 - -
Gma15g00534 385 CDD RING-H2_PA-TM-RING 166 209 - -
Gma15g00534 385 ProSiteProfiles Zinc finger RING-type profile. 167 209 IPR001841 -
Gma15g00534 385 SUPERFAMILY RING/U-box 161 215 - -
Gma15g00534 385 MobiDBLite consensus disorder prediction 106 125 - -
Gma15g00534 385 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 376 IPR044675 -
Gma15g00534 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 216 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00534 Gma-Chr15 4450869 4452399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00534 71 261 C3H Transcription Factor Family AT1G72220 48.205 3.06e-48 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00534 - - gmx:100804758 754.207