Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00523 ATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGCGCAAGATCCTGCAAATGCTTCTGCAAGTCAGGCCAATAAAGAGGAAATAGATTCTCGATCAGTCTTTGTAGGCAATGTGGACTATTCATGCACTCCTGAAGAAGTGCAACAGCATTTTCAGTCTTGTGGAACAGTAAACAGAGTCACCATTCGAACTGATAAGTTTGGCCAACCCAAGGGTTATGCCTATGTTGAGTTCCTTGAGGTGGAGGCTGTTCAGGAGGCCCTTTTGCTGAATGAATCTGAACTTCATGGGCGCCAATTAAAGGTAACGGCTAAAAGGACCAACATACCAGGGATGAAACAGTATCGTCCCCGTCGGACCATCAATCCTTACATGGGGGGGTTTCGAGGCAGAACCCCATATGCACCTCCCTTTATCTACTCTCCATATGGATATGGAAAGGTTCCAAGGTTCAGAATGGCAATGCGCTACAGCCCCTACTATTGA 594 0.4798 MENDDVDMHAADTSEELDDMKKRLKEMEDEAAALREMQAKVEKEMGSAQDPANASASQANKEEIDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRTINPYMGGFRGRTPYAPPFIYSPYGYGKVPRFRMAMRYSPYY 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00523 197 PANTHER - 4 194 - -
Gma15g00523 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 137 IPR000504 GO:0003723
Gma15g00523 197 SUPERFAMILY RNA-binding domain, RBD 55 167 IPR035979 GO:0003676
Gma15g00523 197 CDD RRM_II_PABPs 68 139 - -
Gma15g00523 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 143 IPR000504 GO:0003723
Gma15g00523 197 MobiDBLite consensus disorder prediction 1 22 - -
Gma15g00523 197 Coils Coil 10 44 - -
Gma15g00523 197 MobiDBLite consensus disorder prediction 41 63 - -
Gma15g00523 197 Gene3D - 4 140 IPR012677 -
Gma15g00523 197 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 194 - -
Gma15g00523 197 SMART rrm1_1 68 139 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00523 Gma-Chr15 4375741 4380455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00523 68 138 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 1.02e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00523 K14396 - gmx:100791351 389.423