Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00488 ATGGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGGAAGCACACGCTGCACAAGGTTACCCAATACAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCACTCTTCTAG 318 0.4717 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00488 105 Pfam Ribosomal protein L44 19 94 IPR000552 GO:0003735|GO:0005840|GO:0006412
Gma15g00488 105 PANTHER 60S RIBOSOMAL PROTEIN L44-LIKE 2 105 - -
Gma15g00488 105 ProSitePatterns Ribosomal protein L44e signature. 63 74 IPR000552 GO:0003735|GO:0005840|GO:0006412
Gma15g00488 105 MobiDBLite consensus disorder prediction 28 56 - -
Gma15g00488 105 SUPERFAMILY Zn-binding ribosomal proteins 2 94 IPR011332 GO:0006412
Gma15g00488 105 MobiDBLite consensus disorder prediction 28 48 - -
Gma15g00488 105 Gene3D - 1 105 - -
Gma15g00488 105 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 2 105 IPR000552 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00488 Gma-Chr15 4079956 4081079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00488 1 105 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 91.429 4.48e-67 195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01215 05 33860139 33861326 Gma15g00488 15 4079956 4081079 PCT
Gma08g00716 08 5892504 5893572 Gma15g00488 15 4079956 4081079 PCT
Gma15g00488 15 4079956 4081079 Gma05g01215 05 33860139 33861326 PCT
Gma15g00488 15 4079956 4081079 Gma08g00716 08 5892504 5893572 PCT