Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00478 ATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATGCTTACGTGGGTGATGAAGCCCAATCAAAAAGGGGTATACTCACCTTGAAGTATCCTATAGAGCATGGCATAGTCAGCAACTGGGACGATATGGAGAAGATTTGGCATCACACATTTTACAATGAGCTACGTGTTGCCCCTGAAGAACACCCCGTACTTCTTACCGAGGCACCACTCAATCCCAAGGCCAACAGAGAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCGTGATTTAACAGAGTACTTGGTGAAAATCCTTACCGAGAGAGGATACTCCTTCAGCACCTCTGCCGAAAAGGAAATTGTCCGTGATGTGAAGGAGAAATTGGCATACGTGGCCCTTGATTTCGAACAAGAAATGGAGACTACTAAGAGTAGTTCTGCAGTGGAAAAGAGCTATGAATTGCCTGATGGACAGGTCATTACAATAGGTTCTGAGAGATTCCGTTGCCCAGAAGTACTGTTCCAGCCTTCTCTGATTGGTATGGAAGCTACTGGAATTCATGAAACGACATACAATTCCATCATGAAATGTGATGTTGATATTAGGAAGGATCTGTATGGAAACATCGTGCTTAGTGGAGGGTCTACTATGTTTCCGGGAATTGCTGATCGCATGAGCAAGGAAATTAGTGCTCTTGCACCCAGTAGCATGAAAATCAAGGTGGTTGCACCTCCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCACTTAGCACCTTCCAACAGATGTGGATCTCCAAGGGTGAATATGATGAATCTGGGCCAGCCATCGTTCATCGGAAGCTTTGTTCTGAAAGCATCCCGAATCACGTGGCGATTTCACCATCCTTCTCAATCACATTCTTCTTAGCTGCAAATTCGTTTGTTCTGCTGTTAACAAGGCGGGATTGGCGAAACTCCTATGCTGGAGAGACCAATGCTAAAGGTGAGGAGCAAAAGAAATTGGATGTGCTTTCAAATGAATTATTTGTGAAAGCCTTAATCAGCAGTGGACGCAGATGCCTTCTTGTTTCTGAAGAGGTTGAAGAGGCTATATTTGTGCCATCATCACATCGTGGCAAGTCAATCTTTGGTATTTACGTAGTGAAGAATGAGGCTGAAGTAAGTCTTGAAGATGCATTGCAACCTGGGAACCAAATGTTAGCAGCTGGTTACTGCATGTATGGAAGCTCTTGCACGTTCGTGCTTAGCAAAGGAAATGGAGTGAAGTTCATATTGactcacccaaacatcaagATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGTGTTCATTCTAACATTGATGAGTAATGCAGTATGGTTGCTGATATCCATCGAACTTTGCTTTATGGTGGCATCTTCATGTACCCTGCTGATGCTTCTCTATGAAGTCTTTCCAATGTCATATTTGATGGAGCAAGCAGGAGGTCAGGCTTTCACAGGAAAAAATACATGA 1791 0.44 MADAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYLVKILTERGYSFSTSAEKEIVRDVKEKLAYVALDFEQEMETTKSSSAVEKSYELPDGQVITIGSERFRCPEVLFQPSLIGMEATGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKLCSESIPNHVAISPSFSITFFLAANSFVLLLTRRDWRNSYAGETNAKGEEQKKLDVLSNELFVKALISSGRRCLLVSEEVEEAIFVPSSHRGKSIFGIYVVKNEAEVSLEDALQPGNQMLAAGYCMYGSSCTFVLSKGNGVKFILTHPNIKIPSKGKIYSVNEGNVFILTLMSNAVWLLISIELCFMVASSCTLLMLLYEVFPMSYLMEQAGGQAFTGKNT 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00478 596 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Gma15g00478 596 Gene3D - 542 596 - -
Gma15g00478 596 Gene3D - 470 525 - -
Gma15g00478 596 Pfam Actin 5 375 IPR004000 -
Gma15g00478 596 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Gma15g00478 596 PANTHER ACTIN 1 375 - -
Gma15g00478 596 PRINTS Actin signature 238 254 IPR004000 -
Gma15g00478 596 PRINTS Actin signature 28 37 IPR004000 -
Gma15g00478 596 PRINTS Actin signature 117 130 IPR004000 -
Gma15g00478 596 PRINTS Actin signature 51 62 IPR004000 -
Gma15g00478 596 PRINTS Actin signature 142 161 IPR004000 -
Gma15g00478 596 PRINTS Actin signature 63 85 IPR004000 -
Gma15g00478 596 Pfam Fructose-1-6-bisphosphatase, N-terminal domain 469 523 IPR033391 -
Gma15g00478 596 Pfam Fructose-1-6-bisphosphatase, N-terminal domain 416 468 IPR033391 -
Gma15g00478 596 Pfam Fructose-1-6-bisphosphatase, C-terminal domain 570 595 IPR044015 -
Gma15g00478 596 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Gma15g00478 596 Gene3D - 10 371 - -
Gma15g00478 596 SUPERFAMILY Carbohydrate phosphatase 412 595 - -
Gma15g00478 596 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Gma15g00478 596 Gene3D - 140 340 - -
Gma15g00478 596 PANTHER ACTIN 1 375 IPR004000 -
Gma15g00478 596 SUPERFAMILY Actin-like ATPase domain 149 375 IPR043129 -
Gma15g00478 596 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Gma15g00478 596 Gene3D Actin; Chain A, domain 4 182 273 - -
Gma15g00478 596 Gene3D - 405 469 - -
Gma15g00478 596 SMART actin_3 7 377 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00478 Gma-Chr15 4030799 4037508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00478 1 375 Cytoskeleton Gene Families AT3G12110 94.133 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00478 K10355 - gmx:100778206 748.814