Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00440 ATGGGAAGAAGTAACGGTCGTAGGTCCCTTCAAGAAACACTCCGGCTCCAACTTGAGTCCTGCAAATCCAAATACTCCACCGCCGAAGAATATGCCAACTATCTCCCTCTTAATTCCACCGCAAAGCTTAATCACGCTCGCACACCCAAGCACTGCAAAAACGACGATGACGACGACGAAGGAAAGGCTCAAAGCGCGTCTCGAAAGCGGCGGAAGAAAATCGATAGGAGTGAGGAGACATTGCAGAGGATGGAAGCGTTGCACGTCCGAAGGAAGGTGCAGGGATCTTCCTCATCGTCCTCTGCTTCGGAGTGCGACGATGAAGATGAAGAGGGAACCGTGTCGACTTCGGAGGACACAATTTACGGGGAGAAGGTGGAGCCCGAGTTTGATTTGATGAAGACAACGCTGCGAAAGTCGTATACGCCGAAGAAGGTTGCCACGGAGGAAAAGAACGTTGAATTGGAGGTGGGGAATAGCAGTAAGGACACTCTTGTGAATGAGGAAATGGGGAATAGCAGTAAAGGAACTAGTACTCTTGTGAACGAAGAATGGAAAGAAGTGAAGGGTTCGTGTTGGGGTTCGGTTTCGAATGGGAAGGATGGACCGAGGTTTAAGGATTTGGGTGGGATGAAGGAGGTTTTGGAGGAACCGAAGAATGAAGTGATTGTGCCTTTGTTCCATCCCCAATTGCCTAGGCAGTTGGGAGTGAGGCCAATGGCTGGCATTTTGTTGCATGGACCACCTGGCTGTGGGAAGACTAAACTTGCTCATGCTATAGCAAATGAGACTGGTCTTCCTTTCTATCATATATCAGATCCTCTTGATACAAAGTCAGGATTTTTGCTTTATGGACCTCCTGGTTGTGGTAAAACACTGATTGCCAAAGCTGTTGTCAATGAGGCAGGGGCTAATTTTATTCATATTAAGGTCAGTCTAATACTCCACCCTTTTCTCATTAGTTTTGGTATTATTGACACTTTGACAACCAAACGTGGTAAAGAAGGTGGTTGGGTTATTGAACGACTATTGAACCAGTTGCTTGTTGGGTTAGATGGCGCAGAGGAACGAAGAGATGTTTTTGTGGTTGGTGCTACAAATAGGCCTGAGGTGATGGATCGTGCTGTACTACTACGGCCTGGTAGGTTTGGTAAACTTCTTTATGTTCCACTTCCAAGCCCAGATGAACGAGTTTTGATATTAAAGGCTCTTGCAAGGAAGGAGGCTGTTGATGCCTCTGTGGATTTGAGTGACATAGCCAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCTGATCTTGCTGCATTGATGAATGAAGCAGCAATGGCTGCTCTTGTTGAGAATTTGGACTCAATTGAGACAACTTGTGATACATTGACCATCAAGAGTCCAATCAAGAGACACCATTTTGAGGTAGCACTGAGTATAGTCTCTCCGTCTCAAAAGCAGTACTATCAGCACTTGTCAGAGGGCTTTAAAGCAACATGA 1488 0.463 MGRSNGRRSLQETLRLQLESCKSKYSTAEEYANYLPLNSTAKLNHARTPKHCKNDDDDDEGKAQSASRKRRKKIDRSEETLQRMEALHVRRKVQGSSSSSSASECDDEDEEGTVSTSEDTIYGEKVEPEFDLMKTTLRKSYTPKKVATEEKNVELEVGNSSKDTLVNEEMGNSSKGTSTLVNEEWKEVKGSCWGSVSNGKDGPRFKDLGGMKEVLEEPKNEVIVPLFHPQLPRQLGVRPMAGILLHGPPGCGKTKLAHAIANETGLPFYHISDPLDTKSGFLLYGPPGCGKTLIAKAVVNEAGANFIHIKVSLILHPFLISFGIIDTLTTKRGKEGGWVIERLLNQLLVGLDGAEERRDVFVVGATNRPEVMDRAVLLRPGRFGKLLYVPLPSPDERVLILKALARKEAVDASVDLSDIAKMEACENLSGADLAALMNEAAMAALVENLDSIETTCDTLTIKSPIKRHHFEVALSIVSPSQKQYYQHLSEGFKAT 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00440 495 Gene3D - 393 484 - -
Gma15g00440 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 469 IPR027417 -
Gma15g00440 495 Pfam AAA+ lid domain 413 454 IPR041569 -
Gma15g00440 495 Gene3D - 320 392 IPR027417 -
Gma15g00440 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 272 IPR027417 -
Gma15g00440 495 SMART AAA_5 239 393 IPR003593 -
Gma15g00440 495 ProSitePatterns AAA-protein family signature. 360 379 IPR003960 GO:0005524|GO:0016887
Gma15g00440 495 PANTHER AAA-FAMILY ATPASE 276 489 - -
Gma15g00440 495 PANTHER AAA-FAMILY ATPASE 77 274 - -
Gma15g00440 495 Gene3D - 194 273 IPR027417 -
Gma15g00440 495 MobiDBLite consensus disorder prediction 48 90 - -
Gma15g00440 495 CDD AAA 274 391 - -
Gma15g00440 495 MobiDBLite consensus disorder prediction 35 118 - -
Gma15g00440 495 Gene3D - 274 319 IPR027417 -
Gma15g00440 495 Pfam ATPase family associated with various cellular activities (AAA) 282 315 IPR003959 GO:0005524|GO:0016887
Gma15g00440 495 Pfam ATPase family associated with various cellular activities (AAA) 325 390 IPR003959 GO:0005524|GO:0016887
Gma15g00440 495 Pfam ATPase family associated with various cellular activities (AAA) 243 272 IPR003959 GO:0005524|GO:0016887
Gma15g00440 495 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 276 489 - -
Gma15g00440 495 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 77 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00440 Gma-Chr15 3751821 3754698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00440 205 493 Calmodulin-binding Proteins AT3G56690 36.426 5.81e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00440 K14571 - gmx:100800513 778.474