Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00431 ATGAGCCCTTGTGCTGCTTGCAAGATTCTGAGGCGAAGATGTGCTGAGAAATGTGTCTTGGCACCTTATTTCCCTCTCACTGAACCTTCCAAGTTTACCACTGCACACCGAGTCTTCGGTGCCAGCAACATCATCAAGTTCTTGCAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTGGCCAGCATGGTTTATGAGGCTGGTGCAAGAATAAGAGACCCAGTATATGGATGTGCAGGTGCAATTTGCCAGCTTCAAAAGCAAGTCAATGAACTTCAAGCACAGTTAGCAAAGGCACAAGCTGAGGTTGTAAACATGCAACTCCAACAAGCCAATCTGGTGGCTCTAATTTGCATGGAAATGGCACAAACACAAACTCCACAGGAATATTCACCACAACAATCTGTGGACAACTTCATTTCAAGCACTTCCCACAGCAGTGGCTATCAAAACAATCTCAATTTCTTTGAGGAGAACACCAATAACCTAAACTCTTTGTGGGAGCCTCTTTGGACATGA 519 0.4528 MSPCAACKILRRRCAEKCVLAPYFPLTEPSKFTTAHRVFGASNIIKFLQELPESQRADAVASMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVNMQLQQANLVALICMEMAQTQTPQEYSPQQSVDNFISSTSHSSGYQNNLNFFEENTNNLNSLWEPLWT 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00431 172 ProSiteProfiles LOB domain profile. 2 103 IPR004883 -
Gma15g00431 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 1 169 - -
Gma15g00431 172 Pfam Lateral organ boundaries (LOB) domain 3 100 IPR004883 -
Gma15g00431 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 169 - -
Gma15g00431 172 Coils Coil 82 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00431 Gma-Chr15 3686146 3687823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00431 1 172 AS2 family AT2G28500 65.761 1.83e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma15g00431 LOB 7.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00431 - - gmx:100798401 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00431 15 3686146 3687823 Gma15g00431 15 3686146 3687823 ECH
Gma13g02928 13 43838719 43840847 Gma15g00431 15 3686146 3687823 ECH
Gma13g02928 13 43838719 43840847 Gma15g00431 15 3686146 3687823 GST
Gma15g00431 15 3686146 3687823 Gma12g00641 12 5368511 5370501 PCT
Gma15g00431 15 3686146 3687823 Gma11g01343 11 11660483 11662956 PCT
Gma12g00641 12 5368511 5370501 Gma15g00431 15 3686146 3687823 PCT
Gma11g01343 11 11660483 11662956 Gma15g00431 15 3686146 3687823 PCT