Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00416 ATGGAGCAGTCAGAAAAATCGCCTAAAAAAACATCATCACTGAGATCATCATTTCCGAGAGATCCACGTGGCTCACTCGAAGTGTTTAACCCAAACACTTCAACTTCAACTTCAACCAACGTGCGCGTGCGTTCACAGCCTCTTTGGAAATCGTGGACGGAGTCGGAAGAACCGCGCCATGAAATCGCCGCAACGTCGTGGATGGCCATCAATCCGGCGGCTCCGGCTGCCGGAGAAAGAGGAGAGGCGGCGCAGAGGGCGGCGGAGTGGGGTCTGGTGCTCCGGACCGACACCGAAACCGGCAAGCCGCGGGGCGTGGAGGCGAGGAACTCCGGCGGCGAGGAACCTAACGCTGCGAAACTAGCCGCCGTTGCTTCGTCGTCCAGGAAGAACTCTCAGAACTCCGCCAGAAATTCCGGCGACTCTTCCGGCGGCGGCGGAGGGATTCCGAGAATATCGGAGGATGTGATGGGGGCTTTGTCGGCTTTTCAACAGACTTTCGTGGTTTCGGATGCTACCAAACCCGATTACCCGATCCTGTATGCGAGTGCCGGGTTCTTTAAAATGACAGGTTATACGTCCAAGGAAGTTATTGGGAGAAATTGCCGGTTTTTACAGGGTGCGGACACGGATCCCGAAGACGTAGCAAAGATAAGGGAAGCATTGCAAAGTGGGAAAATTTACTGCGGAAGGCTATTAAATTACAAGAAGGATGGGACACCTTTCTGGAACCTTCTCACTATTTCACCCATCAAGGATGAAGATGGCAAAGTGCTCAAATTTATTGGAATGCAAGTGGAGGTTAGCAAGCATACGGAGGGGTCCAAGGAGAAGATGCTACGTCCCAATGGATTGCCCGAATCCTTGATTCGATATGATGcacggcagaaagagaaggctacaagttcagtaactgagttgctgCAGGCCATGAAACGCCCCCGAGCATTAAGTGAATCCGCAAGTCGTCCCTCCATCAGAAAATCAGGATCTAGACCTGCTGAGGAAGGAAAAGAACTACCACAAGAACAACAAGAAGAGGAAGACAAAGAGAAAGCACAACAAACATTAAGAAGAAAATCTGAGAGTGGAGCTTCATTTGGACGCAAATCAGAAGGAGGACATAGAATTTCAATAGAACGAATCAGTGAGCTGCCTGAAAGTAAACAGAAAAACTCTCAGCGCCGTTCTTTCATGGGATTCAGGAGGAAAAGTCAGTCCAATGATGAAAGCATGGATAATGAACTGATTGAGGATGTCAGCTCTGAGAGTGAGGATGATAAAGGGCCTGATAGTTTGGAATTAGATGACAAAGAAAAGCAGAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATCGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCAGACAATCCTATAATCTTTGCATCGGATAGCTTCTTAGAGCTTACAGAATATAGCCGTGAAGAAATCTTGGGAAGGAACTGCAGGTTTCTGCAAGGACCTGAAACTGATCCGGCAACTGTGAGAAAAATTAGAGAGGCAATTGACAATCAAACGGAAGTTACCGTGCAACTGATCAATTATACAAAGAGTGGAAAGAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGACCAGAAGGGAGAAGTGCAGTATTTTATTGGTGTTCAACTTGATGGTAGTCAACATGTAGAGCCTCTTCACAACTGCATCGCAGAAGATACTGCAAAGGAGGGAGAACAGTTGGTCAAACAAACGGCAGAAAATGTTGATGAGGCGGTAAGAGATTTTCCGGATGCTAACAAGAAACCAGATGATTTATGGACAAATCATTCAAAAGCAGTTCACCCGAAACCTCATAGGAAGGATGACCCTGCATGGAAAGCTATCCAAAAGgtcctagaaagtggagaacagataggcttaaagcactttaggccaattaaaccattggggtcaggagatactggcagCGTGCATCTGGTGGAGCTACGTGGAACTGGTCAATATTTTGCCATGAAGGCTATGGATAAGGGTGTTATGCTCAATCGTAACAAGGTTGTGCATAGAGCTTGCGCAGAGagagaaattcttgacaagttggaccacccctttctacctgcattatatgcttcctttcagaccaaaacacacgtttgtttgataactgattattgtcctggaggagaattattcctgcttcttgaccggcaaccaactaaggttctaaaggaagatgccgtgagATTTTATGCAGCTGAGGTAGTGATCGCATTGGAGTACCTTCATTGTCAAGGGATAATATATCGAGATTTGAAGCCAGAAAATGTGTTACTCAAGAGCAACGGGCATGTGTCTCTAACAGATTTTGATTTGTCATGTTTAACATTTAGCAAGCCACAGCTTATAATTTCAGCTACCAATTCAAAGAAGAAGAAAAAGAAGAAACAGAAAAGTCAAGAGGTTCCAATGTTTATGGCAGAACCAGTGAGAGCATCAAATTCTTTTGTTGGCACGGAAGAGTACATTGCTCCGGAAATTATAACTGGTTCAGGTCACACAAGTGCTGTGGATTGGTGGGCTCTAGGTATTCTAATATATGAAATGCTTTATGGGTATACGCCATTTCGGGGGAAGACAAGACAAAAAACATTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCGGTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCAAAAGACAGATTGGGTTCACGCGAAGGAGCAAATGAAATTAAACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATGAAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAAGAAGGCAAAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGA 2952 0.4109 MEQSEKSPKKTSSLRSSFPRDPRGSLEVFNPNTSTSTSTNVRVRSQPLWKSWTESEEPRHEIAATSWMAINPAAPAAGERGEAAQRAAEWGLVLRTDTETGKPRGVEARNSGGEEPNAAKLAAVASSSRKNSQNSARNSGDSSGGGGGIPRISEDVMGALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQSGKIYCGRLLNYKKDGTPFWNLLTISPIKDEDGKVLKFIGMQVEVSKHTEGSKEKMLRPNGLPESLIRYDARQKEKATSSVTELLQAMKRPRALSESASRPSIRKSGSRPAEEGKELPQEQQEEEDKEKAQQTLRRKSESGASFGRKSEGGHRISIERISELPESKQKNSQRRSFMGFRRKSQSNDESMDNELIEDVSSESEDDKGPDSLELDDKEKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNCIAEDTAKEGEQLVKQTAENVDEAVRDFPDANKKPDDLWTNHSKAVHPKPHRKDDPAWKAIQKVLESGEQIGLKHFRPIKPLGSGDTGSVHLVELRGTGQYFAMKAMDKGVMLNRNKVVHRACAEREILDKLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVIALEYLHCQGIIYRDLKPENVLLKSNGHVSLTDFDLSCLTFSKPQLIISATNSKKKKKKKQKSQEVPMFMAEPVRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILIYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLQGKQLIYWLLQRDPKDRLGSREGANEIKRHPFFRGVNWALVRCMKPPELDAPLLPETEEEKEGKDIDPGLEDLQANVF 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00416 983 MobiDBLite consensus disorder prediction 373 391 - -
Gma15g00416 983 ProSiteProfiles PAC domain profile. 520 574 IPR000700 -
Gma15g00416 983 CDD PAS 461 561 IPR000014 -
Gma15g00416 983 MobiDBLite consensus disorder prediction 329 366 - -
Gma15g00416 983 Pfam Protein kinase domain 649 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma15g00416 983 PANTHER FLIPPASE KINASE 1-RELATED 105 983 - -
Gma15g00416 983 TIGRFAM sensory_box: PAS domain S-box protein 471 561 IPR000014 -
Gma15g00416 983 TIGRFAM sensory_box: PAS domain S-box protein 179 272 IPR000014 -
Gma15g00416 983 Gene3D PAS domain 166 323 - -
Gma15g00416 983 MobiDBLite consensus disorder prediction 960 974 - -
Gma15g00416 983 SUPERFAMILY PYP-like sensor domain (PAS domain) 462 561 IPR035965 -
Gma15g00416 983 MobiDBLite consensus disorder prediction 124 142 - -
Gma15g00416 983 CDD PAS 179 268 IPR000014 -
Gma15g00416 983 SMART serkin_6 647 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma15g00416 983 Coils Coil 343 363 - -
Gma15g00416 983 Gene3D Phosphorylase Kinase; domain 1 646 968 - -
Gma15g00416 983 ProSiteProfiles PAS repeat profile. 152 223 IPR000014 -
Gma15g00416 983 MobiDBLite consensus disorder prediction 601 625 - -
Gma15g00416 983 Pfam PAS domain 173 269 IPR000014 -
Gma15g00416 983 Pfam PAS domain 469 561 IPR000014 -
Gma15g00416 983 ProSiteProfiles PAC domain profile. 226 280 IPR000700 -
Gma15g00416 983 SMART pas_2 154 223 IPR000014 -
Gma15g00416 983 SMART pas_2 448 517 IPR000014 -
Gma15g00416 983 ProSiteProfiles PAS repeat profile. 446 519 IPR000014 -
Gma15g00416 983 SMART pac_2 523 565 IPR001610 -
Gma15g00416 983 SMART pac_2 229 271 IPR001610 -
Gma15g00416 983 PANTHER PHOTOTROPIN-1 105 983 - -
Gma15g00416 983 ProSitePatterns Protein kinases ATP-binding region signature. 653 676 IPR017441 GO:0005524
Gma15g00416 983 MobiDBLite consensus disorder prediction 309 446 - -
Gma15g00416 983 MobiDBLite consensus disorder prediction 93 151 - -
Gma15g00416 983 MobiDBLite consensus disorder prediction 426 446 - -
Gma15g00416 983 MobiDBLite consensus disorder prediction 27 44 - -
Gma15g00416 983 MobiDBLite consensus disorder prediction 960 983 - -
Gma15g00416 983 Gene3D PAS domain 435 599 - -
Gma15g00416 983 CDD STKc_phototropin_like 645 961 - -
Gma15g00416 983 ProSiteProfiles Protein kinase domain profile. 647 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma15g00416 983 SUPERFAMILY PYP-like sensor domain (PAS domain) 173 265 IPR035965 -
Gma15g00416 983 SUPERFAMILY Protein kinase-like (PK-like) 630 957 IPR011009 -
Gma15g00416 983 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672|GO:0006468
Gma15g00416 983 MobiDBLite consensus disorder prediction 1 44 - -
Gma15g00416 983 Gene3D Transferase(Phosphotransferase) domain 1 732 961 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00416 Gma-Chr15 3497368 3510918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00416 1 983 AGC Kinase Gene Family AT3G45780 68.452 0.0 1331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gma15g00416 Pkinase 3.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00416 K20715 - gmx:100776796 1871.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00416 15 3497368 3510918 Gma15g00416 15 3497368 3510918 ECH
Gma13g02947 13 44029196 44044099 Gma15g00416 15 3497368 3510918 GST
Gma15g00416 15 3497368 3510918 Gma12g00658 12 5627030 5646178 PCT
Gma12g00658 12 5627030 5646178 Gma15g00416 15 3497368 3510918 PCT