Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00396 ATGACCCCCCAGGAAGAACGCCTTGTCTTGGAGCTTCACTCAAAATGGGGAAATAGGTGGTCAAGAATTGCTCGAAAGTTACCAGGGCGCACTGACAATGAGATCAAGAACTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGACAAAAAGCGAGGAGAAGCTGCATCATCATCATCATCTAGTGTTGATTCCTCAATATCCTCAAACAACCATGCGGTGGATCCACATGCTTCCAAGAAAGCAGGAGAAGAGAGCTTTTATGACACTGGAGGTCATGGTGTGACAGCCTCAACCCAAGATCAGGGTCAAAAAGGTGAACAAGGGTTGTTCTCTATGGATGATATATGGAAGGATATTGACAATATGTCAGAAGAGAACAACACTCTTCAGCCAGTTTATGAAGGGAACAGTGAAGAGGGTTGCAACTTCTCTTGCCCACCACAAGTGCCTTCTCCATCATCATGGGAATATTCTTCTGACCCTCTATGGGTGATGGATGAGGAAAGTTTGTTTTGCCCTTTGAGTGAACCATATTTTTCCTGCTATGCACAAGGCAGCGTTTTTTTAACCGGCTAA 579 0.4508 MTPQEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKAQDKKRGEAASSSSSSVDSSISSNNHAVDPHASKKAGEESFYDTGGHGVTASTQDQGQKGEQGLFSMDDIWKDIDNMSEENNTLQPVYEGNSEEGCNFSCPPQVPSPSSWEYSSDPLWVMDEESLFCPLSEPYFSCYAQGSVFLTG 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00396 192 MobiDBLite consensus disorder prediction 54 75 - -
Gma15g00396 192 PANTHER TRANSCRIPTION FACTOR MYB48-LIKE ISOFORM X1 1 183 - -
Gma15g00396 192 SUPERFAMILY Homeodomain-like 2 48 IPR009057 -
Gma15g00396 192 ProSiteProfiles Myb-like domain profile. 1 43 IPR001005 -
Gma15g00396 192 MobiDBLite consensus disorder prediction 92 107 - -
Gma15g00396 192 CDD SANT 1 43 IPR001005 -
Gma15g00396 192 MobiDBLite consensus disorder prediction 45 107 - -
Gma15g00396 192 Pfam Myb-like DNA-binding domain 2 42 IPR001005 -
Gma15g00396 192 Gene3D - 2 73 - -
Gma15g00396 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 47 IPR017930 -
Gma15g00396 192 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 183 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma15g00396 192 SMART sant 1 45 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00396 Gma-Chr15 3293714 3295329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00396 1 169 MYB Transcription Factor Family AT3G46130 53.179 5.57e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma15g00396 Myb_DNA-binding 5.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00396 K09422 - gmx:100775900 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00396 15 3293714 3295329 Gma15g00396 15 3293714 3295329 ECH
Gma13g02971 13 44252961 44254617 Gma15g00396 15 3293714 3295329 GST
Gma12g00587 12 4932010 4933557 Gma15g00396 15 3293714 3295329 PCT
Gma11g01294 11 11062348 11063913 Gma15g00396 15 3293714 3295329 PCT