Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00392 ATGAAGAGAGGCAGAGAAGAGAGTAAGTTAGACATGGCTAATTGCTTGATGCTATTGACGAAAGTTGGAGAGAGTGAAACCAATTACCCAATATCAAAGGGTAGTGATATTGGTGATTTCAAGTgcaagacttgcaatagaaggttctcttcttttcaagcccttggtggccatagagcaAGCCACAAAAAACCAAAGCTCATGGTCACAGATCTTTCGTGCCATCAAGAGTTACCGAACCCAACCATGAAACAACAACCTAGGATGCACCCGTGTCCGATTTGTGGGCTTGAGTTTGCTATTGGACAAGCTTTGGGAGGGCACATGAGAAAGCATAGAACTGCTATTAATGATGGCTTGTTGTGTGGTAAACCTTCTTCTTCGTTGTCCATCTTGAAGGAATCATCGAAAGATGGTGATCAAAAGTTGAATTTGCGCTTGGACTTGAACTTGACGCCATTGGAGGAGGATGATCTTAAGCTCAACCTAAGGACGCCCGTGCTCAATTGTTTCATTTGA 519 0.3834 MKRGREESKLDMANCLMLLTKVGESETNYPISKGSDIGDFKCKTCNRRFSSFQALGGHRASHKKPKLMVTDLSCHQELPNPTMKQQPRMHPCPICGLEFAIGQALGGHMRKHRTAINDGLLCGKPSSSLSILKESSKDGDQKLNLRLDLNLTPLEEDDLKLNLRTPVLNCFI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00392 172 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Gma15g00392 172 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Gma15g00392 172 Gene3D Classic Zinc Finger 37 112 - -
Gma15g00392 172 PANTHER ZINC FINGER PROTEIN ZAT5 4 170 - -
Gma15g00392 172 SUPERFAMILY beta-beta-alpha zinc fingers 40 112 IPR036236 -
Gma15g00392 172 SMART c2h2final6 90 112 IPR013087 -
Gma15g00392 172 SMART c2h2final6 40 62 IPR013087 -
Gma15g00392 172 Pfam C2H2-type zinc finger 90 114 - -
Gma15g00392 172 Pfam C2H2-type zinc finger 40 65 - -
Gma15g00392 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Gma15g00392 172 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 4 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00392 Gma-Chr15 3259423 3260141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00392 1 163 C2H2 Transcription Factor Family AT2G28710 46.667 4.05e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma15g00392 zf-C2H2_6 3.5e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00392 - - gmx:100813871 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00392 15 3259423 3260141 Gma15g00392 15 3259423 3260141 ECH
Gma13g02974 13 44292275 44292917 Gma15g00392 15 3259423 3260141 GST
Gma15g00392 15 3259423 3260141 Gma12g00585 12 4901966 4904193 PCT
Gma15g00392 15 3259423 3260141 Gma11g01291 11 11012266 11013053 PCT
Gma12g00585 12 4901966 4904193 Gma15g00392 15 3259423 3260141 PCT
Gma11g01291 11 11012266 11013053 Gma15g00392 15 3259423 3260141 PCT