Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00359 ATGGGTGTGTTCAGTGCAGTGCTGTGCCTTATGTCCCTAATGTGGATGGTGGAAGCTCGAATTCCAGGCGTTTACACGGGCGGCGCCTGGCAAAGTGCTCACGCTACATTCTACGGAGGATCCGATGCATCCGGCACCATGGGAGGAGCATGCGGGTACGGGAACCTGTACAGCCAAGGGTACGGAGTGAACACTGCAGCGTTGAGCACGGCACTCTTCAACAGCGGCCTCAGCTGCGGTGCGTGCTTTGAGATCAAATGCGCAAACGACAAGCAGTGGTGTCACTCCGGCAGCCCTTCCATCTTCATCACCGCCACCAACTTCTGTCCCCCAAATTACGCTCTTCCAAACGACAATGGCGGCTGGTGCAACCCCCCTCGCCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATCGCCGAATACCGCGCCGGCATCGTCCCTGTCGCCTACCGCAGGGTGGCATGTAGGAAGCATGGGGGGATCAGGTTCACAATAAACGGTTTCCGTTACTTTAACCTGGTTTTGATCAGCAACGTGGCGGGTGCAGGGGATATCGTGCACGCCTACGTTAAGGGGTCACGAACCGGGTGGATAGCAATGAGCAGAAACTGGGGTCAGAACTGGCAGTCAAACGCCGTTTTGGTGGGCCAGGCTTTGTCCTTCAGAGTTACCGCCAGTGACCGTCGCTCTTCTACCTCTTGGAACATTGTTCCACCAAATTGGCAATTTGCTCAAACTTTCACTGGAAAGAACTTCCGTGTCTGA 771 0.5551 MGVFSAVLCLMSLMWMVEARIPGVYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDKQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVACRKHGGIRFTINGFRYFNLVLISNVAGAGDIVHAYVKGSRTGWIAMSRNWGQNWQSNAVLVGQALSFRVTASDRRSSTSWNIVPPNWQFAQTFTGKNFRV 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00359 256 Gene3D - 162 254 IPR036749 -
Gma15g00359 256 Pfam Lytic transglycolase 65 152 IPR009009 -
Gma15g00359 256 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Gma15g00359 256 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Gma15g00359 256 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Gma15g00359 256 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Gma15g00359 256 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Gma15g00359 256 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Gma15g00359 256 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Gma15g00359 256 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Gma15g00359 256 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Gma15g00359 256 PANTHER EXPANSIN 7 255 - -
Gma15g00359 256 SUPERFAMILY Barwin-like endoglucanases 29 180 IPR036908 -
Gma15g00359 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Gma15g00359 256 SMART dpbb_1 65 152 IPR007112 -
Gma15g00359 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 162 IPR007112 -
Gma15g00359 256 PANTHER EXPANSIN-A15 7 255 IPR002963 GO:0009664
Gma15g00359 256 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Gma15g00359 256 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Gma15g00359 256 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Gma15g00359 256 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Gma15g00359 256 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Gma15g00359 256 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Gma15g00359 256 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Gma15g00359 256 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Gma15g00359 256 Gene3D - 18 158 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00359 Gma-Chr15 3049513 3051020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00359 13 256 Expansin Gene Family AT2G39700 85.246 4.75e-160 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00359 - - gmx:100791522 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03005 13 44534715 44536116 Gma15g00359 15 3049513 3051020 GST
Gma15g00359 15 3049513 3051020 Gma12g00557 12 4664488 4666971 PCT
Gma15g00359 15 3049513 3051020 Gma11g01259 11 10732993 10735054 PCT
Gma12g00557 12 4664488 4666971 Gma15g00359 15 3049513 3051020 PCT
Gma11g01259 11 10732993 10735054 Gma15g00359 15 3049513 3051020 PCT