Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00326 ATGAGGAAGCCAGAGGCGAGTAATAATAATACTAAAAACAACAACAACAATAGCAAGAAGcttagaaaggggttgtggtcacctgaagaagatgacaagctcatgaactacatgctaaaccatggacaagggtgttggagcgatgtggcaagaaatgctggcctccaaaggtgtggcaaaagttgtcgccttcgatggatcaattacttgaggcctgatcttaagagaggtgcattctcaccccaagaagaggaactcatcatccacttccattcccttcttggaaacaGatggtctcaaatagcggcgcgtttgcctgggcgaaccgacaatgaaataaaaaacttttggaattcgacgataaagaaaagactcaggaatatgtcttccacgaccaccacaacctcaccctcaccctcatcaaatgcaagcgagacctcaatatccgagcctagtaatAAAGACCTCAACATGGGAGGGTTTATTTCCACACAACATAATCAACACGCAGGCTTTGTTCCTATGTTCGGTTCATCTCCATCACCATCAATAATGCAAACCGGTACAGTTTTCAATACCTTGATTGACAGATTGCCTATGCTGGAGCATGGACTAAACATGCCAGCTTCTGGAGGGTACTTCGAAGGCACAGGTATTCCTTGCTTTTCGCAAAGTGAAGTTAACAAATTAGGTTCTTGTTATTTAGAAAACGGAGTATTTGGGAGAAGTGTAAATATCGGGGTAGAAGGGGATATGTTTGTTCCTCCCCTAGAGAATGCTACATGCAGCAGGAGAGAAACAACTAACAGCAGTTACTTTGACGATGACATAAATAGTATTCTTAATAACTGCAACATTGGCATAGGTGAAAATAAGGCTCATGATGGGGTGGAGAATTTGTTTCAACAAGAGTTAGCCACTGCCACTGCCACAGGAGAATGGGACTTTGAGGAGTTGATGAAATTAGATGTTTCCTCCTTTCCGTTTCTTGATTTTTCATACTGA 1005 0.2448 MRKPEASNNNTKNNNNNSKKLRKGLWSPEEDDKLMNYMLNHGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLRNMSSTTTTTSPSPSSNASETSISEPSNKDLNMGGFISTQHNQHAGFVPMFGSSPSPSIMQTGTVFNTLIDRLPMLEHGLNMPASGGYFEGTGIPCFSQSEVNKLGSCYLENGVFGRSVNIGVEGDMFVPPLENATCSRRETTNSSYFDDDINSILNNCNIGIGENKAHDGVENLFQQELATATATGEWDFEELMKLDVSSFPFLDFSY 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00326 334 CDD SANT 26 70 IPR001005 -
Gma15g00326 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Gma15g00326 334 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Gma15g00326 334 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Gma15g00326 334 PANTHER MYB TRANSCRIPTION FACTOR 1 334 - -
Gma15g00326 334 Gene3D - 77 150 - -
Gma15g00326 334 SUPERFAMILY Homeodomain-like 21 117 IPR009057 -
Gma15g00326 334 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Gma15g00326 334 MobiDBLite consensus disorder prediction 127 160 - -
Gma15g00326 334 PANTHER MYB DOMAIN PROTEIN 55 1 334 - -
Gma15g00326 334 MobiDBLite consensus disorder prediction 1 24 - -
Gma15g00326 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 70 IPR017930 -
Gma15g00326 334 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Gma15g00326 334 CDD SANT 78 118 IPR001005 -
Gma15g00326 334 Gene3D - 20 76 - -
Gma15g00326 334 MobiDBLite consensus disorder prediction 7 22 - -
Gma15g00326 334 SMART sant 75 123 IPR001005 -
Gma15g00326 334 SMART sant 22 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00326 Gma-Chr15 2824709 2827357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00326 1 329 MYB Transcription Factor Family AT5G12870 47.576 2.04e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma15g00326 Myb_DNA-binding 2.5e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00326 15 2824709 2827357 Gma15g00326 15 2824709 2827357 ECH
Gma15g00326 15 2824709 2827357 Gma12g00513 12 4288357 4290528 PCT
Gma15g00326 15 2824709 2827357 Gma11g01213 11 10354576 10357168 PCT
Gma12g00513 12 4288357 4290528 Gma15g00326 15 2824709 2827357 PCT
Gma11g01213 11 10354576 10357168 Gma15g00326 15 2824709 2827357 PCT