Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00323 ATGTTTCGCGCCCATTACCCTTCCGTTCGCGGCGCCAAAGTCGTCAGCGACCCCAACACCGGCCGCTCCAAGGGTTACGGTTTCGTTAAGTTTTCTGATGAGAATGAACGGAACCGGGCCATGACTGAAATGAACGGCGTTTATTGCTCCACCAGGCCCATGCGAATTAGTGCCGCTACGCCCAAGAAGACCACCAGTGCTTATGCTGCACCCGCCGCGCCTGTGCCGAAACCGGTGTATCCGGTTCCGGCCTACACTGCGCCGGTTGTTCAAGTTCAACCACCGGAGTATGATGTCAATAATACTGCCATTTTTGTCGGTAATTTGGATCTTAATGTGTCAGAGGAGGAGCTGAAGCAAAACTTTCTGCAATTTGGGGAAATTGTCTCTGTCAAAGTTCAGTCTGGCAAGGGATGTGGTTTTGTTCAATTTGGGACCAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGAAAAGATGATAGGTCAACAAGTGGTCCGGATTTCATGGGGTAGGACTCTAACAGCTAGACAGGACTTACCTGGTGGCTGGGGACCACAGATGGATCCAAATCAATGGAGTGCCTATTATGGGTATGGACAGGGTTATGAAGCCTATGCTTATGGGGCTGCTCATGATCCCTCATTTTATGCATATGGTGCATATGCTGGCTATGCACAATACCCCCAACAGGTTGAAGGTGCTCAAGACCTATCGGGTATGTCTGTGCCTACCATGGAACAAAGGGAGGAATTGTATGATCCCTTGGCAATGCCTGATGTTGATAAGTTAAATGCTGCATACCTCTCAGTACATGGAAGTGCCATTTTAGGGCGGTTGCCCTGGCAAAAAACCTGTTCGACATCCTTACAGCAAGCTTAA 885 0.4938 MFRAHYPSVRGAKVVSDPNTGRSKGYGFVKFSDENERNRAMTEMNGVYCSTRPMRISAATPKKTTSAYAAPAAPVPKPVYPVPAYTAPVVQVQPPEYDVNNTAIFVGNLDLNVSEEELKQNFLQFGEIVSVKVQSGKGCGFVQFGTRASAEEAIQKMQEKMIGQQVVRISWGRTLTARQDLPGGWGPQMDPNQWSAYYGYGQGYEAYAYGAAHDPSFYAYGAYAGYAQYPQQVEGAQDLSGMSVPTMEQREELYDPLAMPDVDKLNAAYLSVHGSAILGRLPWQKTCSTSLQQA 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00323 294 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 2 232 - -
Gma15g00323 294 Gene3D - 90 179 IPR012677 -
Gma15g00323 294 SUPERFAMILY RNA-binding domain, RBD 82 203 IPR035979 GO:0003676
Gma15g00323 294 SMART rrm1_1 103 170 IPR000504 GO:0003723
Gma15g00323 294 SMART rrm1_1 1 57 IPR000504 GO:0003723
Gma15g00323 294 Gene3D - 1 72 IPR012677 -
Gma15g00323 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 167 IPR000504 GO:0003723
Gma15g00323 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 49 IPR000504 GO:0003723
Gma15g00323 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 174 IPR000504 GO:0003723
Gma15g00323 294 SUPERFAMILY RNA-binding domain, RBD 5 66 IPR035979 GO:0003676
Gma15g00323 294 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 232 - -
Gma15g00323 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 61 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00323 Gma-Chr15 2797736 2800083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00323 14 174 Eukaryotic Initiation Factors Gene Family AT1G34140 27.108 1.53e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00323 - - gmx:100818294 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00323 15 2797736 2800083 Gma15g00323 15 2797736 2800083 ECH
Gma13g03037 13 44762009 44764817 Gma15g00323 15 2797736 2800083 GST
Gma15g00323 15 2797736 2800083 Gma12g00508 12 4252402 4255740 PCT
Gma15g00323 15 2797736 2800083 Gma11g01207 11 10317114 10320607 PCT
Gma12g00508 12 4252402 4255740 Gma15g00323 15 2797736 2800083 PCT
Gma11g01207 11 10317114 10320607 Gma15g00323 15 2797736 2800083 PCT