Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00316 ATGGACCATGACAAGACTGGATGCGAAGCTCCCCCAGAAGGTCCTATATTGTGCATCACCAACTGCGGATTTTTTGGAAGTGCAGCTACCATGAACATGTGTTCTAAGTGCCACAAAGACATGATGCTGAAACAGGAGCAGGCAGGGCTTGTAGCATCATCCATTGGGAATATTATGAATGGGTCATCAAGCAGCAGTGGAAATGAACCTGCCATTGCTACCAGTGTGGATGTTTCAGTCAATTCAATAGAGCCTAAAATTATCCCCGCACAACCTTTAGTTGCTTCAGGTTCAGAGGAGAGTGATGAGGCAAAGCCCAAGGATGGTCCAAATCGATGCAGCAACTGCAATAAGCGGGTTGGTTTGACAGGATTTAATTGTCGATGTGGTAACCTTTTCTGTTCTGTACATCGCTACTCAGACAAGCATAATTGCCCATTTGATTACCACACTGCTGCAAGGGATGCCATAGCTAAAGCGAATCCGGCTGTCAAGGTTGAGAAACTTGATAAGATCTAG 519 0.4547 MDHDKTGCEAPPEGPILCITNCGFFGSAATMNMCSKCHKDMMLKQEQAGLVASSIGNIMNGSSSSSGNEPAIATSVDVSVNSIEPKIIPAQPLVASGSEESDEAKPKDGPNRCSNCNKRVGLTGFNCRCGNLFCSVHRYSDKHNCPFDYHTAARDAIAKANPAVKVEKLDKI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00316 172 Gene3D - 92 168 IPR035896 -
Gma15g00316 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Gma15g00316 172 Gene3D - 4 70 - -
Gma15g00316 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Gma15g00316 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Gma15g00316 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Gma15g00316 172 SUPERFAMILY AN1-like Zinc finger 96 166 IPR035896 -
Gma15g00316 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Gma15g00316 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Gma15g00316 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Gma15g00316 172 PANTHER ZINC FINGER AN1 DOMAIN STRESS-ASSOCIATED PROTEIN 1 172 - -
Gma15g00316 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00316 Gma-Chr15 2730997 2733338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00316 12 172 C2H2 Transcription Factor Family AT3G52800 42.604 8.61e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00316 - - gmx:100781607 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00316 15 2730997 2733338 Gma15g00316 15 2730997 2733338 ECH
Gma13g03046 13 44833648 44834046 Gma15g00316 15 2730997 2733338 ECH
Gma03g01294 03 39078968 39079390 Gma15g00316 15 2730997 2733338 ECH
Gma19g01349 19 42787844 42790454 Gma15g00316 15 2730997 2733338 ECH