Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00309 ATGGAGTCAGATCTCGAGCAGCAGCCGCAGGTGAATTCCTCGGGTTTAACTCGGTACCGATCGGCGCCGAGTTCGTATTTCTCTAACATCATTGACCGCGAGTTCTACGAGCACGTCTTCAACCGTCCCTCGAGTCCCGAAACGGAGCGAGTGTTCTCACGCTTCGTTAACAGCTTAAACAGTGAAGAAGAAGATTCGCTCCACCACAAGCTCTCAACTGATTCTTCTTCTTctgctgcggttaaggaagaggttaaccaacaagaccagggtatcaacgaggaacacgtggcggtggctgcgctacagcagagtaataacaacatcaataattacaacaacaacaacaacaacaacTACTCTGCTTCTCATAATTTCTACCAAAGCTCCTCCTCCAAACCTCCCTTGCCGAACCAGAACCCGAACCTTCCCTCAGCTATGGAGCAAGGATCGTTTTCAATGGGACTCAGGCATAGTGGAAATAATTCTAACCTTACCAGGCATAGTAGCTCTCCCGCAGGACTATTTTCCCAAATTAACATTGAAAATGTGTATGCTGGTGTGAGAGGCATGGGGAGTTTGGGAGCTGTTAACAACAGTATCGAAGATGCGAAATTTTCTAGTTCGAGGAGGTTGAAGAAtcaaccgaactattcttcgtcggggagaatgtcgtccattgctgaaattggggacaaagggtatagagaaagtagtccagacagtgaagcttttgctgatggtaacgattttatggccggtttccaagttggtcattgggatgatactgcaatgatgtctgacaacgttggtggtctcaaaagatttagtgaagaagattcaaaaccattttctggcttaaatgcggttgagactcagaatgaaacgggaCAGACTCATGCTCCTTTGGCCCATCAGTTGAGTTTGCCAAATACTTCAGCTGAAATGGCTGCCATTGAGAAGTTTCTGCAGTTTTCAGATTCTGTTCCGTGCAAAATCCGTGCCAAACGGGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGTATGAGGAAACTTCAGGATCTTGTCCCAAACATGGACAAGCAAACTAACACAGCTGATATGTTGGACTTGGCTGTGGATTACATCAAAGACCTTCAAAAGCAAGTTCAGACACTTTCAGATTGTCATGCAAAGTGTACGTGTTCACACGAGAAGCAACAATAA 1236 0.322 MESDLEQQPQVNSSGLTRYRSAPSSYFSNIIDREFYEHVFNRPSSPETERVFSRFVNSLNSEEEDSLHHKLSTDSSSSAAVKEEVNQQDQGINEEHVAVAALQQSNNNINNYNNNNNNNYSASHNFYQSSSSKPPLPNQNPNLPSAMEQGSFSMGLRHSGNNSNLTRHSSSPAGLFSQINIENVYAGVRGMGSLGAVNNSIEDAKFSSSRRLKNQPNYSSSGRMSSIAEIGDKGYRESSPDSEAFADGNDFMAGFQVGHWDDTAMMSDNVGGLKRFSEEDSKPFSGLNAVETQNETGQTHAPLAHQLSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVQTLSDCHAKCTCSHEKQQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00309 411 Pfam Helix-loop-helix DNA-binding domain 344 390 IPR011598 GO:0046983
Gma15g00309 411 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 403 IPR036638 GO:0046983
Gma15g00309 411 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 7 408 - -
Gma15g00309 411 MobiDBLite consensus disorder prediction 62 90 - -
Gma15g00309 411 Gene3D - 340 410 IPR036638 GO:0046983
Gma15g00309 411 MobiDBLite consensus disorder prediction 72 90 - -
Gma15g00309 411 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 389 IPR011598 GO:0046983
Gma15g00309 411 MobiDBLite consensus disorder prediction 107 149 - -
Gma15g00309 411 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 408 - -
Gma15g00309 411 SMART finulus 345 395 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00309 Gma-Chr15 2686442 2689889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00309 7 406 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.049 8.41e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma15g00309 HLH 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00309 - - gmx:100806368 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00309 15 2686442 2689889 Gma15g00309 15 2686442 2689889 ECH
Gma13g03052 13 44886022 44889226 Gma15g00309 15 2686442 2689889 ECH
Gma03g01302 03 39201065 39204811 Gma15g00309 15 2686442 2689889 ECH
Gma19g01359 19 42912228 42915776 Gma15g00309 15 2686442 2689889 ECH
Gma10g00858 10 13400181 13403280 Gma15g00309 15 2686442 2689889 ECH