Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00281 ATGTGGTTCTCATCATTTCTTAGTCCTTTTCTAATGCGCCACTCCAAAGTACGTCCCAATGCACCTTCTGATGATCAATCATCCCAACTAACACACAATCCGCAACTTGATCATGGAGGGTGGTCTAGGCGTGGTCGTGAATTTTGTGAGGCAAGAAGAGCGTTTTTGAACAGTTACCATTTGAGTTTGGAAAGAAAAAACAATGTTAGCTTCAAGGAAAAGTTGAAGAAGTCAGTGAAAGAGGTTAATGAAGCAGCAATGGGAGTTGTTTTGGGCATGCGTCGTGGGGTGTCCAAGAGAAGGGTTGGCATCAAGGTTTTTAGGGTCAAAATGTCTTCACACTCGATGGTTCTTGTTACCTTAAGATGTTTTATCCCATGGTTGAACAAAATGAAAAAGTTGTTAGCTAAAAGAAGACCAAGTTTTTGGTGTTGTAGAAGGAAGAGAAGAATTAACATGAAAATTCAGTGTGACGTGTGTGAGAGAGCTCCAGCAACAGTGATTTGTTGCGCGGATGAGGCTGCTTTGTGTGCCAAATGTGACGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAAAGACTTCTTCTTCAATGTCTATCAAGCAAGCTTCCCACATGTGACATTTGCCAAGACAAGCCAGCATTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGATTGTGATGAACCAATTCATTCAGCCGGAAGCCTTTCCGCGAACCACCAGCGCTTCCTTGCTACTGGTATCCGAGTGGCCTCGAGTTCTAATTGCACCAAAGACAATGAAAAAAGTCACTCGGAGCCTCCTAATAGGAGTGCACAACAAGTTTCTGCGAAAATTCCTCCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCTGTTGATGACTTATTGGAACTAACAGGCTTTGAATCACCTGAGAAAAAGGAATCTCTGCAGTTTGGAGAGCTGGAATGGCTTACAGATGTGGGTATTTTCGGCGAACAATTTGCTCAGGAAGCCTTGGCTGCAGCTGAAGTACCTCAGCTTCCCGAAACTCATAACAGTAGCAGTGTTGCTTCATACAAAACCTCCAAATCCTACATGTCCCACAAAAAGCCTAGGATTGAAGTCCTAAATGATGATGATGATGATGAGTATTTTACTGTGCCCGATCTCGGCTAA 1179 0.4368 MWFSSFLSPFLMRHSKVRPNAPSDDQSSQLTHNPQLDHGGWSRRGREFCEARRAFLNSYHLSLERKNNVSFKEKLKKSVKEVNEAAMGVVLGMRRGVSKRRVGIKVFRVKMSSHSMVLVTLRCFIPWLNKMKKLLAKRRPSFWCCRRKRRINMKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSSKLPTCDICQDKPAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIRVASSSNCTKDNEKSHSEPPNRSAQQVSAKIPPQQVPSFTSSWAVDDLLELTGFESPEKKESLQFGELEWLTDVGIFGEQFAQEALAAAEVPQLPETHNSSSVASYKTSKSYMSHKKPRIEVLNDDDDDEYFTVPDLG 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00281 392 Gene3D Classic Zinc Finger 152 244 - -
Gma15g00281 392 SMART bboxneu5 152 199 IPR000315 GO:0008270
Gma15g00281 392 SMART bboxneu5 204 251 IPR000315 GO:0008270
Gma15g00281 392 CDD Bbox1_BBX-like 157 199 - -
Gma15g00281 392 ProSiteProfiles Zinc finger B-box type profile. 152 199 IPR000315 GO:0008270
Gma15g00281 392 PANTHER B-BOX ZINC FINGER PROTEIN 22 153 392 - -
Gma15g00281 392 ProSiteProfiles Zinc finger B-box type profile. 204 251 IPR000315 GO:0008270
Gma15g00281 392 MobiDBLite consensus disorder prediction 21 36 - -
Gma15g00281 392 CDD Bbox1_BBX-like 209 250 - -
Gma15g00281 392 MobiDBLite consensus disorder prediction 17 39 - -
Gma15g00281 392 MobiDBLite consensus disorder prediction 260 282 - -
Gma15g00281 392 Pfam B-box zinc finger 155 196 IPR000315 GO:0008270
Gma15g00281 392 Pfam B-box zinc finger 205 247 IPR000315 GO:0008270
Gma15g00281 392 PANTHER B-BOX ZINC FINGER PROTEIN 24 153 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00281 Gma-Chr15 2444162 2448090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00281 153 313 Orphan Transcription Factor Family AT1G06040 64.286 1.55e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gma15g00281 zf-B_box 3.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00281 - - gmx:100797515 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00281 15 2444162 2448090 Gma15g00281 15 2444162 2448090 ECH
Gma13g03080 13 45109700 45112534 Gma15g00281 15 2444162 2448090 GST
Gma15g00281 15 2444162 2448090 Gma12g00460 12 3772222 3776198 PCT
Gma15g00281 15 2444162 2448090 Gma11g01162 11 9782881 9785380 PCT
Gma12g00460 12 3772222 3776198 Gma15g00281 15 2444162 2448090 PCT
Gma11g01162 11 9782881 9785380 Gma15g00281 15 2444162 2448090 PCT