Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00276 ATGCCGCCTCCTTCGAAATCCGTGGAAGGCGAGGAGTGGGGAACCCCCACCAACAACCTCTGGGTCGGGAATCTGCCGACGGAGGTCACAGATTCCGATCTCATGGAACTATTCGCTCCGTACGGTTCTCTGGACTCACTCATCTCCTACTCCTCGCGCACCTTCGCTTTCGTCTTGTTCAGGCGCATCGAAGACGCTAAGGCAGCGAAATCCAACTTGCAAGGCGCGTTGCTGCGCGGGTTTCAAATCAGAATCGAGTTTGCCAGACCGGCAAAGCCGTGCAAACAATTGTGGGTGGGTGGTTTTAGTCCCACTGTTGCAAGGGAAGATTTGGAAGCGGAATTTCGCAAATTCGGTAAGATTGAGGATTTTAAGTTCTTTATAGACCGCGGCACTGCGTGTGTTGAGTTTCTCAATCTGGATGCTGCTGCTCGGGCGATGAAAGTCATGAACGGGAAGCGGTTAGGTGGACGCCAGATTTGTGTAGATTTCCTTCGATCACAATCTACGAGAAGAGATTTTTTGGTTGATCATGGGCAGTTTCAGGCTAGACCACAGCATTTACAACCTTCAATTGGGAGGAATAATCAACCCAGTAAAATCTTGTGGATAGGTTTTCCTCCTTCCTTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAAAATCAAGAGTTTTCCTTCTAGACATTATTCATTTGTTGAATTTAGAAGCATTGATGAAGCTCGGCGTGCCAAAGAGGGTCTTCAAGGACGGCTTTTTAATGATCCTCAAATAACAATTATGTATTCAAGCAGTGAGCTGGCACCTGGAAAAGATTACCCTGGCTTTTATCCTGGAGGTAAAGGCCCCATACCTGATGGATTAGGTAATGAGCATCCATTTCGACCGCTACAAACAGATGTATTTGGTCATAATCGTCCTATGGTTCCAAATAATTTTCCTGGACAATTGCCACCTGGACATAATGTCCCAATGCGACCTTTTGGTTCTCAAGGTCTTGAACCTCTTATCTCTGGTCCTGATTTTAATGAGATGGGTCCAAGCTGGAAAAGGCCATCTCCTCCTGCCCCAGGAATGCTTCCTTCTCCTGTGCCTGGTATTAGGCCTCCTACAAGATCCACCTCCGGTGCATGGGATCTACTTGACATAAACCAATTTCAGAGAGATTCTAAACGTTTGAGGATAGATGATGCTTTGTTCATTGGTGATGCTCCATTTCCTTTAAGGAATATAGATGATCGTGGATTAGGAGTAGAACAGCCATTTGCAATTGATTCAGTTATTGATGGAGGTGGTTCTGGTCCAAAGAGTCACCTTGGTCCAGTCGGCACTAGGATCACATCTGGAGTACCTGGTTCTGTCCAACCTGATATTGATCATATATGGCGTGGAATTATTGCAAAAGGGGGAACTCCTGTTTGTCGTGCTAGATGTGTGCCTATTGGGAAAGGGATAGTGACTGAGATTCCTGATATTGTAGATTGTGCTGCCAGGACTGGATTGGATATGCTAACAAAACACTATGCTGATGCAATTGGTTTTGACATTGTTTTCTTTCTCCCTGATAGCGAAGAGGATTTTGCTTCATACACTGAATTCCTTTGCTACCTCAAAGCAAAAAATCGTGCTGGTGTTGCCAAGTTTGTTGATAACACCACTTTATTTTTGGTACCACCTTCTGATTTCTTGACCAAGGTTTTGAAAGTCACAGGACCTGAACGCTTATATGGTGTGGTTCTTAAATTTCCATTAGTTCCAAGTAGCACATCTATGCAACAACCAATGCATTTGCCTTCTCCCTCTACTCAGTATATGCAACGGATTCCTCCTTCACAAGCTGAATATGGTTCAATATTGGTAAAGGAGGAACAGGTTTTACCAATGGATTATAACAGATTGTTGCATGAGGATTCTAAGCATCTGCCAAAACCACTTCATCCAGCTACAAATGTCCCCCCTTCAGCTCATTCTGTTCCTTCTGATTATGCTCCTACTTATACTGCTTCTGCATCCCAAGCTGTTACATGGACACCTGAACTTATTGCAAGTTTAACTTCTTTACTCCCTGCAACAACGCAATCATCAACCACGGGTGGCCCAATGGCAGTGGCTGGTCCCTCTATTGTGAAGCCATCTTTTCCTTCTGTTGCACCTAATGATGGAAATCAATCTCATTTGTGGAAACAAGCTCAGCAAATCCCTGATCCTTCTAGTCATCCTCCTCAACAATTTGGGAGTATTCATAATGTTCAATATCAACCTTATCCACCTGCATCTTCTACTGACCACCCTGCTCAAGTGGTCTCTGGCAGTTCTTGTTTCCAAGATACCAATTCCAGTCTCCAGCAGCCAGTTGCTGTTTCGTCTACACCCATGACTAATTTCATCTTACCTCCTCAAAATGGACAGGTAGCTGTGTCCCCTCAAGTCAGTCAACAGTATCAGGTGGAAGTCCCCCATGGCACTGAGAAAGACTATGGAGTTGTTCAGGGAACAGATGCCTCTGTTTTATATAGTTCTAAGGCGTTCCAACAACCTAATAATTTTATTTCCTCATCCAATCAAGTTGCCAATGCTGCATCACAGCAACAATCTGTGATGCCCTTTACAGTGGACAAAGATAATTCAGTGCCCACAAATCAGCAACCTCAACCTGCTTTATTTGGAGTTGGCCAGGGAGTGTCAGAATTGGAGGCTGATAAGAACCAGAGGTACCAGTCAACACTACAGTTTGCTGCCAACCTTCTCCAGCAGATACAACAACAGCAAACACAAGGAGGGCATGGGCCAGGAAATCAACAATAA 2829 0.445 MPPPSKSVEGEEWGTPTNNLWVGNLPTEVTDSDLMELFAPYGSLDSLISYSSRTFAFVLFRRIEDAKAAKSNLQGALLRGFQIRIEFARPAKPCKQLWVGGFSPTVAREDLEAEFRKFGKIEDFKFFIDRGTACVEFLNLDAAARAMKVMNGKRLGGRQICVDFLRSQSTRRDFLVDHGQFQARPQHLQPSIGRNNQPSKILWIGFPPSFQIDEQMLHNAMILFGEIEKIKSFPSRHYSFVEFRSIDEARRAKEGLQGRLFNDPQITIMYSSSELAPGKDYPGFYPGGKGPIPDGLGNEHPFRPLQTDVFGHNRPMVPNNFPGQLPPGHNVPMRPFGSQGLEPLISGPDFNEMGPSWKRPSPPAPGMLPSPVPGIRPPTRSTSGAWDLLDINQFQRDSKRLRIDDALFIGDAPFPLRNIDDRGLGVEQPFAIDSVIDGGGSGPKSHLGPVGTRITSGVPGSVQPDIDHIWRGIIAKGGTPVCRARCVPIGKGIVTEIPDIVDCAARTGLDMLTKHYADAIGFDIVFFLPDSEEDFASYTEFLCYLKAKNRAGVAKFVDNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPLVPSSTSMQQPMHLPSPSTQYMQRIPPSQAEYGSILVKEEQVLPMDYNRLLHEDSKHLPKPLHPATNVPPSAHSVPSDYAPTYTASASQAVTWTPELIASLTSLLPATTQSSTTGGPMAVAGPSIVKPSFPSVAPNDGNQSHLWKQAQQIPDPSSHPPQQFGSIHNVQYQPYPPASSTDHPAQVVSGSSCFQDTNSSLQQPVAVSSTPMTNFILPPQNGQVAVSPQVSQQYQVEVPHGTEKDYGVVQGTDASVLYSSKAFQQPNNFISSSNQVANAASQQQSVMPFTVDKDNSVPTNQQPQPALFGVGQGVSELEADKNQRYQSTLQFAANLLQQIQQQQTQGGHGPGNQQ 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00276 942 Gene3D - 94 194 IPR012677 -
Gma15g00276 942 Coils Coil 910 930 - -
Gma15g00276 942 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 7 942 - -
Gma15g00276 942 SUPERFAMILY RNA-binding domain, RBD 11 92 IPR035979 GO:0003676
Gma15g00276 942 PANTHER RNA RECOGNITION MOTIF-CONTAINING 7 942 - -
Gma15g00276 942 CDD RRM3_Spen 97 166 - -
Gma15g00276 942 Gene3D - 195 277 IPR012677 -
Gma15g00276 942 SUPERFAMILY RNA-binding domain, RBD 94 270 IPR035979 GO:0003676
Gma15g00276 942 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Gma15g00276 942 MobiDBLite consensus disorder prediction 883 909 - -
Gma15g00276 942 Gene3D - 2 93 IPR012677 -
Gma15g00276 942 MobiDBLite consensus disorder prediction 724 759 - -
Gma15g00276 942 SMART rrm1_1 96 163 IPR000504 GO:0003723
Gma15g00276 942 SMART rrm1_1 201 269 IPR000504 GO:0003723
Gma15g00276 942 SMART rrm1_1 19 86 IPR000504 GO:0003723
Gma15g00276 942 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Gma15g00276 942 CDD RRM3_Spen 20 89 - -
Gma15g00276 942 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Gma15g00276 942 Pfam SPOC domain 464 581 IPR012921 -
Gma15g00276 942 MobiDBLite consensus disorder prediction 700 759 - -
Gma15g00276 942 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 160 IPR000504 GO:0003723
Gma15g00276 942 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Gma15g00276 942 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Gma15g00276 942 CDD RRM3_Spen 202 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00276 Gma-Chr15 2399252 2412943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00276 2 265 Eukaryotic Initiation Factors Gene Family AT4G34110 25.606 2.95e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00276 - - gmx:100806555 1865.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00276 15 2399252 2412943 Gma15g00276 15 2399252 2412943 ECH
Gma13g03086 13 45140447 45145927 Gma15g00276 15 2399252 2412943 GST
Gma15g00276 15 2399252 2412943 Gma12g00456 12 3731754 3743232 PCT
Gma15g00276 15 2399252 2412943 Gma11g01155 11 9730477 9741686 PCT
Gma12g00456 12 3731754 3743232 Gma15g00276 15 2399252 2412943 PCT
Gma11g01155 11 9730477 9741686 Gma15g00276 15 2399252 2412943 PCT