Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00272 ATGAACATAAGTCCTTACACTACTCCAAAGAAGCTATCACCACACTCCAATAACCATAACAACATCATTGCCGATGAGGCTGCAGCGTTATTAGATCACAACAACATGCACCGCAGCAACCACAGCCACACTTCCACGAGCCGTTCCTCGGACTCAAGTGAGCCTAGTGAAGACGGTAAATGGGCACCCAAACTTCTCAGAGAGTGTGCAAAAGCAATATCCGAGAGAGACTCAAGCAAAACGCACCATCATCTTTGGATGCTTAACGAGCTTGCTTCGCCTTATGGGGATTGTGATCAGAAACTCGCCTCTTATTTCTTGCAAGCGTTGTTCTGCAGAGCCACTGAGTCTGGTGAGAGGTGCTATAAAACTCTTTCCTCCGTGGCTGAGAAGAACCACTCGTTTGACTCGGCCATGAGGTTGATACTCAAGTTTCAAGAGGTGAGCCCTTGGACAACTTTCGGACACGTGGCGTCGAACGGCGCCATCTTGGAGGCCTTGGAAGGGGAGCCAAAGCTCCACATCATCGATCTCAGCAACACGCTGTGCACCCAGTGGCCAACGCTACTCGAAGCGTTGGCCACGCGAAACGATGAGACACCTCATCTTAAGCTCACAGTGGTCGCGATAGCGGGGTCGGTGATGAAGGAGATTGGTCAACGGATGGAGAAGTTTGCAAGACTCATGGGCGTGCCCTTTGAATTCAACGTGATTAGTGGATTAAGCCAAATCACCAAAGAAGGTTTGGGGGTTCAAGAAGATGAAGCTATAGCTGTGAACTGCGTTGGAACATTGAGAAGAGTGGAAATTGAAGAGAGGGAAAACTTGATTCGTGTTTTCAAGTCTCTTGGTCCTAAAGTGGTAACCGTTGTCGAGGAAGAAGCTGATTTTTGTAGCTCCAGGGAGAATTTTGTTAAGTGCTTTGAAGAGTGTCTCAAGTTCTACACACTCTACTTCGAGATGTTGGAGGAGAGTTTCCCTCCCACTAGCAACGAGAGGTTGATGTTGGAGAGGGAGTGCTCGAGGACCATAGTTAGGGTTTTGGCTTGCTGTGGTAGTGGTGAGTTTGAAGATGATGGAGAGTTTGATTGTTGTGAGAGGAGGGAGAGAGGGATTCAGTGGTGTGAGAGGCTGAGGAGTGCGTTTTCGCCAAGTGGATTCAGCGATGATGTGGTGGATGATGTGAAAGCATTGCTCAAGAGGTACCAACCAGGGTGGTCACTTGTGGTGTCTCAAGGAGATGAACATCTCTCAGGGATTTACTTGACATGGAAGGAGGAACCGGTGGTTTGGGCATCAGCATGGAAACCCTAG 1314 0.4886 MNISPYTTPKKLSPHSNNHNNIIADEAAALLDHNNMHRSNHSHTSTSRSSDSSEPSEDGKWAPKLLRECAKAISERDSSKTHHHLWMLNELASPYGDCDQKLASYFLQALFCRATESGERCYKTLSSVAEKNHSFDSAMRLILKFQEVSPWTTFGHVASNGAILEALEGEPKLHIIDLSNTLCTQWPTLLEALATRNDETPHLKLTVVAIAGSVMKEIGQRMEKFARLMGVPFEFNVISGLSQITKEGLGVQEDEAIAVNCVGTLRRVEIEERENLIRVFKSLGPKVVTVVEEEADFCSSRENFVKCFEECLKFYTLYFEMLEESFPPTSNERLMLERECSRTIVRVLACCGSGEFEDDGEFDCCERRERGIQWCERLRSAFSPSGFSDDVVDDVKALLKRYQPGWSLVVSQGDEHLSGIYLTWKEEPVVWASAWKP 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00272 437 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 37 436 IPR005202 -
Gma15g00272 437 Pfam GRAS domain family 64 436 IPR005202 -
Gma15g00272 437 ProSiteProfiles GRAS family profile. 53 436 IPR005202 -
Gma15g00272 437 MobiDBLite consensus disorder prediction 38 60 - -
Gma15g00272 437 PANTHER PROTEIN SHORT-ROOT-LIKE 37 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00272 Gma-Chr15 2349980 2351463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00272 37 437 GRAS Transcription Factor Family AT4G37650 51.529 1.84e-142 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma15g00272 GRAS 1.2e-93 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00272 - - gmx:100818806 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00272 15 2349980 2351463 Gma15g00272 15 2349980 2351463 ECH
Gma13g03090 13 45177996 45179358 Gma15g00272 15 2349980 2351463 GST
Gma07g00370 07 3295093 3297231 Gma15g00272 15 2349980 2351463 PCT
Gma16g00068 16 673936 675902 Gma15g00272 15 2349980 2351463 PCT