Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00266 ATGGAATACCCTTTTTCCCCAAAGGAGAGTGTAATTGGGGATTGGCAATCTTCTGGAGCTCAGTTGGAGGGATCAGCATCATTAGATGGCAGAATGAGCAATTCAATACCAGAGGATATGCCCAATAGCTTCTCTGAGCTCATGAACTTTGATACCTATGCTGGTTTGTGCAACAGCCCATCCATAACTGATCAGATTTTGGCTAATGACCTTCCATCATTTGCCTCATTATCATATCCGTTGCCCGATGGGTTCAATCTAGTCCAACAGTACAGTGGGCAATACTGTATGTCAGGAGTTGGCAGAAATAACAATGACATGGAAAGCTCCCCCATTTATGGGGAGAAAGTTGTGTGTCAGCAAATGGACACCCTACTTGGTTGCTTAAATGATACAAATGAAGCAAATAACTTGAATTCTAAGCTAAAAATGAATAGCTCTTCTCAACATCTCAATAACTTTGATACAGGCAATTATATGATGTCTAGGTCACCTGGTTTGTCACTTGATGAGAGAATGCTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTACCCATAAAGCATGGTGATCAGTTCATCTTAAGCACGAGTGACCAACCTTATTTGCTAGATCAAATGCTCGCAGGGTATCGTGAAGTGTCCAGGACATTTACATTTTCTACAGAAGGAAAATCTGGTTGTTTCTTAGGACTTCCTGGTCGTGTGTTTACGTCCAAAGTTCCTGAGTGGACTTCAAATGTTGGTTATTACAGTATGAGTGAGTACTTAAGGTTTGAGCATGCAATTAATCACAAGGTTCGTGGATCAATTGCAATTCCCATATTTGATCTGCACTCTGAATTTCCATGCTGTGCTGTACTGGAACTTGTCACTACAAAGGAAAAGCCAGATTTTGACAGAGAATTGGAAATTGTTCGTCATGCACTCCAGCTTGTAAATTTAAGGACTGTCAAGACTCTCAGATGTCTTCCCCAGAGTCTTTCAAACAACAAAAAAGCTACTTTGACCGAGATAGTTGATGTGTTACGATCTGTCTGTCATGCACATAGATTACCACTGGCACTGACATGGATTCCCTGTGGTTACACTGAGTGCTCAAGAGGTGAAGCTTCAAGAATACGAATTAAAGGGGGTCATTCAACTTCTAGTGAAAAAAGCGTACTGTGTCTTGAAGAATCTGCTTGCTACATAACTGATAGAGCAATGGCAGGATTTATCCGTGCATGCATGGAACATCATCTTGAGGAAGGGAAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCTTTCTTCTATCCTGATGTGAAAACATATGATATTAGTGAATATCCACTTGTCCATCATGCACGCAAGTATAATTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACTTATACTAATGATGATGATTACATATTGGAATTCTTTCTGCCTGTCAATATGAGAGGGAGTTCAGAGCAGCAACTTTTATTAGACAACCTCTCGGGTACGATGCAGAGAATTTGTAGTAGTTTGAGGACAGTTTCAGAAACCGAATTATCAGGAATAGAAAGCTCACCAGTGGGGCTTGGAAAGAAAAATGCCCCCAGTTTTTTTCCTTTGTCAAGTAGAAACTCTGACATACCATTAATAAATGGTGACTGTGATTCTGTCCAGAAGATGTCATTGAAGGCAACAACTAACCTAAAGGACAACGAAATTGAGCCTTCTCCTAACCAGGAAAGAAATGGATCAAAAAGACAGGTCCAGAAAAATAGAAGTACATCGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGACGCTGCAAAAAAGATTGGTGTTTGCCCAACAACTCTGAAAAGGATATGCAGGCAACATGGAATTCCAAGGTGGCCATCCCGCAAGATTAATAAAGTCAATCGATCATTGAAGAAGATACAGACTGTGCTTGACTCTGTCCAGGGCATGGAAGGAGGGTTGAAGTTTGATCCTTCTATGGGGGCGTTTGTGGCAGGAGGGTCAATCATCCAGGAAATTGATGCACCTAAAAGTACTATAAAAGACCCCGTGCCTGTTACTCAAGATGCATTCTCAGTACCACCCGCACCTTGTAGTGAAGGTGAGAATTTTTCAATTAAGTTGGAGGGAAAATTGAAGAAAACCAATGTTTCTTCAGTTGATTACAGTGAAGATTCAAAATCTATGGCAATCAATGATGGGTCGTGCCAGATGGCAAGCCTTTGCACCAAGGTGCAGGATTGTCCTGAACAAGCTTGCTTGGGTTCTGTTCTTGCAAAAGAACATGATAAACGAATTCTGAACAAGGGTGGTTTGAGTGTAGAAAAATTTAAACACAATATTGTTGGCCAGAGTTCAAAATCTTTGATTGCTGATGAGATGGACATTGGTGTAGATGGGGATGATGGAGTTGTTGAACGTAACCACCCTACTTCCTCAAGCTTGACAGACTCATCTAATGGCTCTGGCTCAATGATGCATAGCAGTTCATCAGGCTCTCGGAGCTTTGAGAACCAGGATCAGTCCAAAGTCAAATCAACCATCATTGATTGTGGGTCGAAACTAATTGTCAAAGCTACCTATAGAGAAGACACCATTCGTTTCAAGTTTGATCCATCTGAAGGTTGTTTCAGACTATATGAAGAAGTTGCAGCAAGATTCAAACTACAAAATGGGTTATTTCAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGATGCTGATTTGCAAGAGTGTATAGAAATATTGGATGATATTGGCACACGTAGCGTCAGGTTTCTTGTTCGTGATATGCCTTCCGTTTTAAGCAGTTCTGGCAGTAGCAATAGCTACTTGGGAGGCAGCTCATAG 2922 0.412 MEYPFSPKESVIGDWQSSGAQLEGSASLDGRMSNSIPEDMPNSFSELMNFDTYAGLCNSPSITDQILANDLPSFASLSYPLPDGFNLVQQYSGQYCMSGVGRNNNDMESSPIYGEKVVCQQMDTLLGCLNDTNEANNLNSKLKMNSSSQHLNNFDTGNYMMSRSPGLSLDERMLRALSFFKESAGGGILAQVWVPIKHGDQFILSTSDQPYLLDQMLAGYREVSRTFTFSTEGKSGCFLGLPGRVFTSKVPEWTSNVGYYSMSEYLRFEHAINHKVRGSIAIPIFDLHSEFPCCAVLELVTTKEKPDFDRELEIVRHALQLVNLRTVKTLRCLPQSLSNNKKATLTEIVDVLRSVCHAHRLPLALTWIPCGYTECSRGEASRIRIKGGHSTSSEKSVLCLEESACYITDRAMAGFIRACMEHHLEEGKGIAGKALQSNHPFFYPDVKTYDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMRGSSEQQLLLDNLSGTMQRICSSLRTVSETELSGIESSPVGLGKKNAPSFFPLSSRNSDIPLINGDCDSVQKMSLKATTNLKDNEIEPSPNQERNGSKRQVQKNRSTSEKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGIPRWPSRKINKVNRSLKKIQTVLDSVQGMEGGLKFDPSMGAFVAGGSIIQEIDAPKSTIKDPVPVTQDAFSVPPAPCSEGENFSIKLEGKLKKTNVSSVDYSEDSKSMAINDGSCQMASLCTKVQDCPEQACLGSVLAKEHDKRILNKGGLSVEKFKHNIVGQSSKSLIADEMDIGVDGDDGVVERNHPTSSSLTDSSNGSGSMMHSSSSGSRSFENQDQSKVKSTIIDCGSKLIVKATYREDTIRFKFDPSEGCFRLYEEVAARFKLQNGLFQLKYLDDEEEWVMLVNDADLQECIEILDDIGTRSVRFLVRDMPSVLSSSGSSNSYLGGSS 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00266 973 Pfam PB1 domain 876 954 IPR000270 GO:0005515
Gma15g00266 973 CDD PB1_NLP 874 954 IPR034891 -
Gma15g00266 973 PANTHER PROTEIN NLP8 728 969 IPR045012 GO:0003700
Gma15g00266 973 PANTHER PROTEIN NLP8 7 728 IPR045012 GO:0003700
Gma15g00266 973 Pfam RWP-RK domain 604 652 IPR003035 -
Gma15g00266 973 Gene3D - 870 952 - -
Gma15g00266 973 SMART PB1_new 873 955 IPR000270 GO:0005515
Gma15g00266 973 MobiDBLite consensus disorder prediction 572 603 - -
Gma15g00266 973 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 728 969 - -
Gma15g00266 973 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 7 728 - -
Gma15g00266 973 MobiDBLite consensus disorder prediction 1 33 - -
Gma15g00266 973 MobiDBLite consensus disorder prediction 819 857 - -
Gma15g00266 973 ProSiteProfiles RWP-RK domain profile. 586 672 IPR003035 -
Gma15g00266 973 MobiDBLite consensus disorder prediction 572 590 - -
Gma15g00266 973 ProSiteProfiles PB1 domain profile. 873 955 IPR000270 GO:0005515
Gma15g00266 973 MobiDBLite consensus disorder prediction 826 857 - -
Gma15g00266 973 SUPERFAMILY CAD & PB1 domains 870 958 - -
Gma15g00266 973 MobiDBLite consensus disorder prediction 11 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00266 Gma-Chr15 2288704 2296720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00266 1 970 NLP Transcription Factor Family AT2G43500 49.592 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gma15g00266 PB1 1.6e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00266 - - gmx:100804426 1875.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00266 15 2288704 2296720 Gma15g00266 15 2288704 2296720 ECH
Gma13g03098 13 45234191 45239938 Gma15g00266 15 2288704 2296720 GST
Gma15g00266 15 2288704 2296720 Gma12g00448 12 3655240 3659576 PCT
Gma15g00266 15 2288704 2296720 Gma11g01148 11 9655663 9660015 PCT
Gma12g00448 12 3655240 3659576 Gma15g00266 15 2288704 2296720 PCT
Gma11g01148 11 9655663 9660015 Gma15g00266 15 2288704 2296720 PCT