Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00261 ATGAATTGCTTATGTGAGAAAGACTCTGGTCTATTTTCTTCTCATTCAACAGCTCCCTATGTTCTTGGATGCCCATCATGGGCGACTTCTGAATTTGAAGTCCAACGATCATCTATGTCCAGAAGTTTGAGCTCAAAAGTGGATGTTCTTCCACAACAATGCCACAATAGCAAGACATTTAATTTTCAATTCCAAGAACAGGATGCATCTTCAACCAAATCCACTGATCAATCTTATCCAGAAGTTGGTACGGTACAATCCGGTCAAATTTCTGTCCAGCATAGTTCTACTGATTCAACACTTATCAGAAATGAGGGGAAGAGTATGGGATGTGTCATCAGGTCATTTATGGGGAGTCAGGATTTCCCTTTCCCTCCTCCACTACTGGATCACAGACCAATACTTCCAGTGGAAACTGCTCCTGTTCGAATTCCTCTTCAATTGGATTTTGCAGAAGAACCTATATACGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGAAGACAGTATCGAGCAAAACTCGAAGCGCTTAACAAACCCATCAAGGATCGGAAACCGTATCTTCACGAGTCCCGCCATCAACATGCACTGAAGAGAGCTAGAGGCGCTGGTGGACGCTTTCTCAATACAAAAAAACAATTACAATCAAATCATACACCTGGGAATATTGCAGAATCAAAAATGCATCACATTGAAAACTATAGAGATGGTGCTGATGTCTCATATGCATTTAACAGTGATGCAAGAAACATGCAGAATGATGCAGCTGATAAGGGTGGTGGCACCACTCAGCACCCTCTATTTGTCTACATGTGA 819 0.42 MNCLCEKDSGLFSSHSTAPYVLGCPSWATSEFEVQRSSMSRSLSSKVDVLPQQCHNSKTFNFQFQEQDASSTKSTDQSYPEVGTVQSGQISVQHSSTDSTLIRNEGKSMGCVIRSFMGSQDFPFPPPLLDHRPILPVETAPVRIPLQLDFAEEPIYVNSKQYHAILRRRQYRAKLEALNKPIKDRKPYLHESRHQHALKRARGAGGRFLNTKKQLQSNHTPGNIAESKMHHIENYRDGADVSYAFNSDARNMQNDAADKGGGTTQHPLFVYM 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00261 272 ProSiteProfiles NF-YA/HAP2 family profile. 151 211 IPR001289 GO:0003700|GO:0006355
Gma15g00261 272 Gene3D - 151 212 - -
Gma15g00261 272 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 21 110 IPR001289 GO:0003700|GO:0006355
Gma15g00261 272 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 138 237 IPR001289 GO:0003700|GO:0006355
Gma15g00261 272 SMART cbf3 150 211 IPR001289 GO:0003700|GO:0006355
Gma15g00261 272 MobiDBLite consensus disorder prediction 65 85 - -
Gma15g00261 272 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 153 208 IPR001289 GO:0003700|GO:0006355
Gma15g00261 272 ProSitePatterns NF-YA/HAP2 subunit signature. 156 176 IPR018362 GO:0003677|GO:0016602
Gma15g00261 272 PRINTS CCAAT-binding transcription factor subunit B signature 154 176 IPR001289 GO:0003700|GO:0006355
Gma15g00261 272 PRINTS CCAAT-binding transcription factor subunit B signature 185 208 IPR001289 GO:0003700|GO:0006355
Gma15g00261 272 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 21 110 - -
Gma15g00261 272 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 138 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00261 Gma-Chr15 2256202 2259590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00261 14 248 CCAAT-HAP2 Transcription Factor Family AT1G17590 38.971 1.03e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gma15g00261 CBFB_NFYA 1.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00261 K08064 - gmx:100803893 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00261 15 2256202 2259590 Gma15g00261 15 2256202 2259590 ECH
Gma15g00261 15 2256202 2259590 Gma07g00337 07 2985646 2990206 PCT
Gma15g00261 15 2256202 2259590 Gma16g00042 16 380315 382920 PCT
Gma07g00337 07 2985646 2990206 Gma15g00261 15 2256202 2259590 PCT
Gma16g00042 16 380315 382920 Gma15g00261 15 2256202 2259590 PCT
Gma12g00402 12 3293985 3297079 Gma15g00261 15 2256202 2259590 PCT