Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00260 ATGGAGGCACTAAGTCGCTCCGTGGAAGAAATATTCGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCGATGTTGAAGATTTCTACAGCCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATTTCCTAATGAGCAATGGGAGGTAAATTTACCCGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTCCTAGGCATTAACTTTGCTAGGGATGGCATGCTGGAAAAAGACTGGTTATCATTAGTTGCTGTTCATAGTGATACATGGTTACTTGCCCTTGCCTTTTATTTTGGAGCCAGATTTGGATTTGATAAAACTGACAGGAAACGACTATTCGGTATGATCAATGAACTACCAACAATATTTGAAGTTGTTACTGGTGAAGCAAAGAAACAAGTTAAAGAGAAGTCTTCGGTTTCAAACAACAGTGGCAGCAAATCTAAGTCTAACTCTAAAGCGCAGGCTTCCGAAACCCAGGGCAGACAGTCAAAGGCATTACAAACAAAAGATGAGGATGAAGAACTAGAAGAGCAAGATAACGATGAACATGGAGATACCTTGTGTGGGGCATGTGGTGAGAATTATGGTACTGATGAATTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACCCCTGCTAGAGCAGAGCTTATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCTCGCTAA 747 0.4311 MEALSRSVEEIFEDFQGRRAGIIKALTTDVEDFYSQCDPEKENLCLYGFPNEQWEVNLPVEEVPPELPEPVLGINFARDGMLEKDWLSLVAVHSDTWLLALAFYFGARFGFDKTDRKRLFGMINELPTIFEVVTGEAKKQVKEKSSVSNNSGSKSKSNSKAQASETQGRQSKALQTKDEDEELEEQDNDEHGDTLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAELIKQYKCPSCSNKRAR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00260 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 244 IPR013083 -
Gma15g00260 248 SUPERFAMILY FYVE/PHD zinc finger 185 246 IPR011011 -
Gma15g00260 248 MobiDBLite consensus disorder prediction 144 171 - -
Gma15g00260 248 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Gma15g00260 248 SMART PHD_3 195 243 IPR001965 -
Gma15g00260 248 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 248 - -
Gma15g00260 248 Pfam PHD-finger 196 245 IPR019787 -
Gma15g00260 248 PANTHER CPG BINDING PROTEIN 1 248 IPR045104 GO:0006355|GO:0042393
Gma15g00260 248 MobiDBLite consensus disorder prediction 141 190 - -
Gma15g00260 248 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Gma15g00260 248 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Gma15g00260 248 CDD PHD_AL_plant 195 245 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00260 Gma-Chr15 2250244 2255179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00260 6 248 Alfin-like Transcription Factor Family AT3G42790 74.074 3.91e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gma15g00260 Alfin 1.3e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00260 - - gmx:100777146 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00486 17 3998308 4002516 Gma15g00260 15 2250244 2255179 ECH
Gma15g00260 15 2250244 2255179 Gma15g00260 15 2250244 2255179 ECH
Gma15g00260 15 2250244 2255179 Gma07g00336 07 2972997 2982686 PCT
Gma15g00260 15 2250244 2255179 Gma16g00041 16 372357 376547 PCT
Gma07g00336 07 2972997 2982686 Gma15g00260 15 2250244 2255179 PCT
Gma16g00041 16 372357 376547 Gma15g00260 15 2250244 2255179 PCT