Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00249 ATGGCAGGTTTGGCTCCAGAAGGATCGCAGTTTGATGCTCGGCAATATGACTCTAAGATGAATGAATTGCTTTCCGCTGATGGACAAGAATTTTTCACTTCATATGATGAAGTCTATGATAGTTTTGATGCAATGGGCCTTCAAGAAAATCTTCTCAGAGGCATATATGCTTATGGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCAAGGGTCTGGATGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACAGCAACGTTCTGTTCGGGGATTTTGCAGCAGCTTGACTATGGATTGGTCCAGTGTCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTTGCACAACAGATTGAGAAGGTTATGCGAGCTCTAGGTGATTACCTTGGTGTCAAGGTTCATGCTTGTGTTGGTGGGACCAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTCCATACTGTTGTTGGCACTCCTGGACGTGTGTTTGACATGCTACGAAGACAATCTCTTCGCCCAGATCACATAAAAATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGATCTATGACATCTTCCAGCTACTGCCAGGTCAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCTGAGGCCCTGGAGATTACAAGGAAGTTCATGAATAAGCCAGTGAGAATCCTGGTAAAGCGTGATGAATTGacgcttgagggtatcaagcagttttatgtgaatgttgataaggaagattggaaactggagacattatgcgacctttatgagactttggctatcactcagagtgtcatctttgtgaacaccaggcgcaaggTGGACTGGCTCACTGACAAGATGCGAAGCAATGACCATACAGTCTCAGCCACCCATGGAGACATGGACCAAAACACTCGCGATATCATCATGCGTGAATTTCGCTCTGGCTCTTCTCGAGTTCTAATTACCACTGACCTCTTGGCTCGTGGTATAGATGTACAGCAAGTGTCTTTGGTTATAAACTATGATCTTCCTACCCAACCTGAAAATTATCTTCATCGCATAGGACGAAGTGGGCGTTTTGGAAGAAAAGGTGTTGCCATAAACTTTGTGACTTTGGATGATGCAAGAATGCTGTCTGATATTCAGAAGTTCTACAATGTGACTGTAGAGGAGTTGCCATCAAATGTGGCTGATCTGCTCTGA 1242 0.405 MAGLAPEGSQFDARQYDSKMNELLSADGQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPGQIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDARMLSDIQKFYNVTVEELPSNVADLL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00249 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Gma15g00249 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Gma15g00249 413 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 23 413 - -
Gma15g00249 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Gma15g00249 413 Gene3D - 249 413 IPR027417 -
Gma15g00249 413 SMART helicmild6 293 374 IPR001650 -
Gma15g00249 413 CDD SF2_C_DEAD 253 383 - -
Gma15g00249 413 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Gma15g00249 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Gma15g00249 413 CDD DEADc_EIF4A 44 242 - -
Gma15g00249 413 PANTHER RNA HELICASE 23 413 - -
Gma15g00249 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Gma15g00249 413 SMART ultradead3 59 256 IPR014001 -
Gma15g00249 413 Gene3D - 30 248 IPR027417 -
Gma15g00249 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00249 Gma-Chr15 2162664 2165285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00249 1 413 Eukaryotic Initiation Factors Gene Family AT1G72730 88.406 0.0 765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00249 K03257 - gmx:100777628 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00249 15 2162664 2165285 Gma15g00249 15 2162664 2165285 ECH
Gma13g03116 13 45357497 45360639 Gma15g00249 15 2162664 2165285 GST
Gma15g00249 15 2162664 2165285 Gma07g00068 07 560502 562731 PCT
Gma15g00249 15 2162664 2165285 Gma08g01751 08 15592146 15595443 PCT
Gma07g00068 07 560502 562731 Gma15g00249 15 2162664 2165285 PCT
Gma08g01751 08 15592146 15595443 Gma15g00249 15 2162664 2165285 PCT